PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10436047g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | GATA | ||||||||
Protein Properties | Length: 269aa MW: 29682.1 Da PI: 7.0763 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.2 | 9.6e-18 | 140 | 173 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C t+TplWR+gp+g+k+LCnaCG++y kk+ MA_10436047g0010 140 CADCERTTTPLWRSGPQGPKSLCNACGIRYNKKK 173 ******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.756 | 134 | 169 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.5E-18 | 134 | 185 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.23E-13 | 135 | 175 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.7E-16 | 138 | 174 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.29E-12 | 139 | 176 | No hit | No description |
Pfam | PF00320 | 1.5E-15 | 140 | 174 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 140 | 165 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MIATDWEFNG LVRSPSGYGS SRSLSSPETN NAKTMDIEFM RFKEDEEAAE SDDINVHGHA 60 KPDLALSRSD SNLCEEEGST FKVDHGFRRI LMTSFTTDSD INDDQVGETA GITEHENAPA 120 ARAIKGKGTA GSLRNSPRVC ADCERTTTPL WRSGPQGPKS LCNACGIRYN KKKRAMIAAA 180 AAAESLSYKK RSTNSWNTKS TRSSLETTSD RQVQFSDFYK CRGLGKDMDN HMQKELSRLP 240 ILIKVERSFG ELEEAAASLM AIKFGHCYA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00554 | DAP | Transfer from AT5G49300 | Download |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 4e-18 | GATA transcription factor 16 |