PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_10435905g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 592aa MW: 65854.5 Da PI: 5.1777 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 8.2e-13 | 400 | 445 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f eLr ++P+ K++Ka+ L A YIk+L MA_10435905g0020 400 NHVEAERQRREKLNQKFYELRAVVPNV-----SKMDKASLLGDAAAYIKDL 445 799***********************6.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.0E-53 | 19 | 209 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 2.49E-17 | 395 | 462 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.015 | 396 | 445 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.81E-12 | 399 | 445 | No hit | No description |
Pfam | PF00010 | 3.1E-10 | 400 | 445 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.6E-18 | 400 | 466 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.7E-16 | 402 | 451 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009269 | Biological Process | response to desiccation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0009963 | Biological Process | positive regulation of flavonoid biosynthetic process | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0043619 | Biological Process | regulation of transcription from RNA polymerase II promoter in response to oxidative stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051090 | Biological Process | regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:2000068 | Biological Process | regulation of defense response to insect | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 592 aa Download sequence Send to blast |
MDTLMASSVV DQRFSQETLQ QRLQTLVETA SIVWTYAIFW QVSYESSGAI QLCWGDGYYK 60 GSRNTEEDER LRMRSRLTVS PADQELRKKV LRDLHSMISG SDEGNQQDNS SVSVDEEVTD 120 AEWFYLISMM QSFLSGFGVP GTAFSTGAPV WIVGAERLRV STCDRARQAH DLGIQTLVCV 180 PIQGGVVEFG STEDIVENWL FLEQVNRSFK YNLNQTHDNL FQVQSLWPEE TLSVKSSNTM 240 QSAPCIEPVN NAEIQSLNSA LARELPVTGK QKASVFAEQS SLVVKDDKSL LHPLTQQTEA 300 LEAPAIRIPE TVNGTEPQTR ALGFKGSEKN VIKPSIKEDT IGLLSNPPGI VIGGLRSSIE 360 SELSDAEPSA SIKDSTSAVV ERKPRKRGRK PANGREEPLN HVEAERQRRE KLNQKFYELR 420 AVVPNVSKMD KASLLGDAAA YIKDLCSKQQ DLESERVELQ DQIESVKKEL LMNSLKLAAK 480 EATDLSSIDL KGFSQGKFPG LNSEVRILGR EAIIRIQCTK HNHPVARLMT ALQELDLEVL 540 HASISTVKDS LIIQTVIVKM TRGLYTEEQL HALLXQVMDC SRIVLEFALV SA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 2e-47 | 13 | 212 | 3 | 195 | Transcription factor MYC3 |
4rqw_B | 2e-47 | 13 | 212 | 3 | 195 | Transcription factor MYC3 |
4rs9_A | 2e-47 | 13 | 212 | 3 | 195 | Transcription factor MYC3 |
4yz6_A | 2e-47 | 13 | 212 | 3 | 195 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 381 | 389 | RKPRKRGRK |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00084 | PBM | Transfer from AT1G32640 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF676739 | 0.0 | EF676739.1 Picea sitchensis clone WS02750_B15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LLU3 | 0.0 | B8LLU3_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3733 | 12 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32640.1 | 1e-132 | bHLH family protein |