PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10435903g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | HB-other | ||||||||
Protein Properties | Length: 181aa MW: 20995.9 Da PI: 9.6425 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.5 | 9.7e-18 | 7 | 63 | 3 | 55 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRake 55 k ++t+eq+e+Le l++++++ps +r++L +++ +++ +q+kvWFqNrR +e MA_10435903g0020 7 KYVRYTREQVEALEGLYHQCPKPSSLRRQQLIRECplfsNVDPKQIKVWFQNRRCRE 63 6789**************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.69 | 2 | 66 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-12 | 4 | 70 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.95E-16 | 7 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.05E-13 | 7 | 63 | No hit | No description |
Pfam | PF00046 | 2.3E-15 | 7 | 63 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-17 | 9 | 63 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MEPESSKYVR YTREQVEALE GLYHQCPKPS SLRRQQLIRE CPLFSNVDPK QIKVWFQNRR 60 CRETQRKEAS RLKSVNRKLN AMNRLLVEEN GRLQTQVSRL VYDNGNFRQH LHNKYVSIAD 120 TNSESVVAIS WPESHMSSGH PPMDASYAGF LSIAEETLKE FLSKAMGTAI EWIQIPGMKI 180 Q |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC477843 | 0.0 | KC477843.1 Larix kaempferi class III homeodomain leucine zipper protein 34 (HDZ34) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009378434.1 | 8e-87 | PREDICTED: homeobox-leucine zipper protein ATHB-15-like, partial | ||||
Swissprot | Q9ZU11 | 8e-77 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | R4UYG4 | 1e-112 | R4UYG4_9SPER; Class III homeodomain leucine zipper protein 34 | ||||
STRING | XP_009378434.1 | 3e-86 | (Pyrus x bretschneideri) | ||||
STRING | evm.model.supercontig_109.22 | 2e-82 | (Carica papaya) | ||||
STRING | POPTR_0003s04860.1 | 1e-81 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.3 | 1e-79 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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