PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10435612g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 595aa MW: 66368.2 Da PI: 7.1818 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9.2e-18 | 173 | 220 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +++++G g+W++ +++ g+ R++k+c++rw +yl MA_10435612g0010 173 KGPWTPEEDQKLVTYIQEHGHGSWRALPQKAGLLRCGKSCRLRWANYL 220 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 226 | 271 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l MA_10435612g0010 226 RGKFSVQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 271 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-24 | 164 | 223 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.172 | 168 | 220 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-30 | 170 | 267 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-14 | 172 | 222 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 173 | 220 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.33E-10 | 175 | 220 | No hit | No description |
PROSITE profile | PS51294 | 26.311 | 221 | 275 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 224 | 275 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-17 | 225 | 273 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-16 | 226 | 271 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.01E-11 | 228 | 271 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000902 | Biological Process | cell morphogenesis | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence Send to blast |
MERCSCISCE PWPRLACVQF KVIDIFFGVS FYRASKTRYL SLQQQALCPS VQGSKILYNE 60 ATKLVESQKN RQANAAATPH FNAFHLDQSE NCDEKKPTII SEKAHSDVQR SSHEENVELP 120 DSHHELLLPS VMLNDGNCYS ARKGERLIGS HTKPKWREIM GRAPCCEKVG LKKGPWTPEE 180 DQKLVTYIQE HGHGSWRALP QKAGLLRCGK SCRLRWANYL RPDIKRGKFS VQEEQTIIQL 240 HALLGNRWSA IATHLPKRTD NEIKNYWNTH LKKRLLQMGI DPVTHKPKSE SIIAAGVHSS 300 NGSSNLSHMA QWESARLEAE SRLARESKLR ARGLWSSPSR NVNVSSDIFS RLRRASQGFD 360 FDKEESKILG LNSVGGFDGM KITQKWDKFQ DLRSGTKLEQ CNLSPLGGSL GCYNPVENGQ 420 IEDRANQSEN CDEKKPTIVS EKAHSDVQSS SHEENVELPD SHHELLLPSV MLNDGNCSSA 480 RSDVSELTKT EQGADTSYDK VGNSDNILSE FQHIHSDEIS SSGGFKSGSS YDGFNADMLL 540 DLVVTPPNGY ATAGCGENRS LSGLSVDDNK EYWSNMFSVC NSLPNGNHSG VQSIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-26 | 171 | 275 | 5 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF087263 | 0.0 | EF087263.1 Picea sitchensis clone WS02737_G10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A222UAC0 | 1e-170 | A0A222UAC0_GINBI; R2R3MYB16 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 1e-100 | myb domain protein 16 |