PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10435549g0050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | GRAS | ||||||||
Protein Properties | Length: 174aa MW: 20053.2 Da PI: 8.4973 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 183.9 | 1.1e-56 | 14 | 169 | 171 | 325 |
GRAS 171 elgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262 +l +++ ++ l ak + d++++ L+++p+EalaVn+++qlh+++desvs++++rd++L++vksl+Pkvv+vveqe+++n+++Fl rf+e l+ MA_10435549g0050 14 HLVIQLTIHRLEAKkKAGDVQPWILNINPDEALAVNFAFQLHHMPDESVSTKNPRDRLLRMVKSLNPKVVTVVEQEVNTNTAPFLPRFMEVLN 106 6779999999966659***************************************************************************** PP GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325 yys++f+ l+a+l+res++r++vE+++l+r+ivn++aceg+er+er e ++kWr+r++++GF+ MA_10435549g0050 107 YYSSVFEPLDATLSRESRDRVNVEKQCLARDIVNIIACEGEERIERYEFAGKWRARMTMVGFS 169 **************************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 29.81 | 1 | 174 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-54 | 14 | 169 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MGIHQKKIPL LLHHLVIQLT IHRLEAKKKA GDVQPWILNI NPDEALAVNF AFQLHHMPDE 60 SVSTKNPRDR LLRMVKSLNP KVVTVVEQEV NTNTAPFLPR FMEVLNYYSS VFEPLDATLS 120 RESRDRVNVE KQCLARDIVN IIACEGEERI ERYEFAGKWR ARMTMVGFSV SSQC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-24 | 40 | 168 | 197 | 323 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT106412 | 0.0 | BT106412.1 Picea glauca clone GQ03001_C01 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003526667.1 | 1e-74 | scarecrow-like protein 1 | ||||
Refseq | XP_003526668.1 | 1e-74 | scarecrow-like protein 1 | ||||
Refseq | XP_014631848.1 | 1e-74 | scarecrow-like protein 1 | ||||
Refseq | XP_014631849.1 | 1e-74 | scarecrow-like protein 1 | ||||
Refseq | XP_014631850.1 | 1e-74 | scarecrow-like protein 1 | ||||
Refseq | XP_028235982.1 | 1e-74 | scarecrow-like protein 1 | ||||
Refseq | XP_028235983.1 | 1e-74 | scarecrow-like protein 1 | ||||
Refseq | XP_028235984.1 | 1e-74 | scarecrow-like protein 1 | ||||
Refseq | XP_028235985.1 | 1e-74 | scarecrow-like protein 1 | ||||
Refseq | XP_028235986.1 | 1e-74 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 4e-68 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A0B4U7X1 | 9e-92 | A0A0B4U7X1_PINRA; SCL7 (Fragment) | ||||
STRING | GLYMA06G12701.1 | 4e-74 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP10802 | 2 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 2e-60 | SCARECROW-like 1 |
Publications ? help Back to Top | |||
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