PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10435446g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

TALE

Protein Properties

Length: 1170aa MW: 127488 Da PI: 6.9517

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10435446g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.7e-09	872	909	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + MA_10435446g0010 872 FEHflHPYPTDADKHMLARQTGLSRSQVSNWFINARVR 909 554459******************************88 PP
2	BELL	117.1	8.3e-38	735	805	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r e+q+++akLls+leeV++rY qy+eq+++v+ sFe +aglg+a+pYt+lAlka+SrhF+cL+dai +q+ MA_10435446g0010 735 RFEIQRRRAKLLSMLEEVHRRYGQYCEQMKMVVTSFESIAGLGAATPYTALALKAMSRHFKCLRDAINNQL 805 779*****************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.9E-56	634	803	IPR006563	POX domain
Pfam	PF07526	2.5E-47	639	801	IPR006563	POX domain
PROSITE profile	PS50071	12.568	850	913	IPR001356	Homeobox domain
CDD	cd00086	3.26E-13	853	914	No hit	No description
SMART	SM00389	1.8E-10	853	917	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.89E-17	855	920	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-28	856	919	IPR009057	Homeodomain-like
Pfam	PF05920	9.5E-19	870	909	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1170 aa Download sequence Send to blast
MFGLHNTRAF FPKSEPVKIS SIRCIAKLAS EIESTTESFV STIGIQTDTS GFSNYILQQS 60 PQSVITTEEH NQTRSRDSSR GYPGHPTQAN TADEMPMYDA SMISSEMYNF PTGAELLGVS 120 PKGIVLQQDS SEDGSNQPSA MGAVSYSSFG HSNSNFSSSK TSIVPNLGNW KSLNTPSNND 180 WPIKFIHGLR NAPSGAYGRH NTIATPLVLA GEAHNQTRSR DSSRGYPGHP TQANTGDEMP 240 MYDASMLSSE MYNFPTGAEL LGVPPKGIVL QQASSEDGSD RPSAMGAVSY SSFGHSNSNF 300 SGSKTSIVPN LGNWKSLNTP SNSDWPIKFI HGLPNAPSGA YGGQNTIATP LVLAGGGLQA 360 GVVKDGSLAA STNIHSQADA MQLYLMNPAY AGYPENSPPA TMHPSNDNVA NQGQESQKHI 420 VEVPLQFPSF QQNALPMVAE VATSTVGSQG FCFAQLPSNL RESAQSQWPS GGNELVLMPS 480 YGNIQNGQYL SPRLNNAMNW GNRQAGSLPN SQWNQEPFVE GKVEDEFRTE QLSVGRDRSG 540 QGLSLSLSSH QPSEMQLQQF EAMTGRTNVL QVATDGKGKS EELFNRPGTN GPGYFSSYSK 600 DGIPGKGYGN PIQGGGGGST MVLHMNVGPL GPFTGYASVL KSSKYLKPAQ QLLDEFCNVG 660 RGHQSNNMPK QKLSKPQTGW VDRSSGGGSV VQNSLDIKSD IGGKMGDSCA AASTTFVPGE 720 TSENGMEQLA YSGDRFEIQR RRAKLLSMLE EVHRRYGQYC EQMKMVVTSF ESIAGLGAAT 780 PYTALALKAM SRHFKCLRDA INNQLRVTSK ALGEDSSLAG VSKGETPRLR FIDQNIRQQR 840 AVQHLGMLEQ HAWRPQRGLP ERSVSVLRAW LFEHFLHPYP TDADKHMLAR QTGLSRSQVS 900 NWFINARVRL WKPMVEEMYL QESKDSSEMD ITLKRKENDS RDKTECLGSE KNMNKHGKMM 960 LDGGSDKQSA SEGGGSKYEH GGSTSQTGQE SSGTAMSMPL ESQFRPAEKV DGMREVDMSA 1020 NRNVRETQSL SSVNVATIGV DRRLEETPGC QNFDHSTKRF RNDDRNKLQG FENTIDFSSY 1080 NHSSAIGGRY SHEDFTPRQF GSAGVSLTLG LRHSGGQEKY SNGLYLSRDD SAPDSNHHYN 1140 IHDSHDQGYG SGFDAQDMQF RKHVGSQLMH

Sequence ? help Back to Top

Protein Sequence Length: 1170 aa Download sequence Send to blast

MFGLHNTRAF FPKSEPVKIS SIRCIAKLAS EIESTTESFV STIGIQTDTS GFSNYILQQS  60
PQSVITTEEH NQTRSRDSSR GYPGHPTQAN TADEMPMYDA SMISSEMYNF PTGAELLGVS  120
PKGIVLQQDS SEDGSNQPSA MGAVSYSSFG HSNSNFSSSK TSIVPNLGNW KSLNTPSNND  180
WPIKFIHGLR NAPSGAYGRH NTIATPLVLA GEAHNQTRSR DSSRGYPGHP TQANTGDEMP  240
MYDASMLSSE MYNFPTGAEL LGVPPKGIVL QQASSEDGSD RPSAMGAVSY SSFGHSNSNF  300
SGSKTSIVPN LGNWKSLNTP SNSDWPIKFI HGLPNAPSGA YGGQNTIATP LVLAGGGLQA  360
GVVKDGSLAA STNIHSQADA MQLYLMNPAY AGYPENSPPA TMHPSNDNVA NQGQESQKHI  420
VEVPLQFPSF QQNALPMVAE VATSTVGSQG FCFAQLPSNL RESAQSQWPS GGNELVLMPS  480
YGNIQNGQYL SPRLNNAMNW GNRQAGSLPN SQWNQEPFVE GKVEDEFRTE QLSVGRDRSG  540
QGLSLSLSSH QPSEMQLQQF EAMTGRTNVL QVATDGKGKS EELFNRPGTN GPGYFSSYSK  600
DGIPGKGYGN PIQGGGGGST MVLHMNVGPL GPFTGYASVL KSSKYLKPAQ QLLDEFCNVG  660
RGHQSNNMPK QKLSKPQTGW VDRSSGGGSV VQNSLDIKSD IGGKMGDSCA AASTTFVPGE  720
TSENGMEQLA YSGDRFEIQR RRAKLLSMLE EVHRRYGQYC EQMKMVVTSF ESIAGLGAAT  780
PYTALALKAM SRHFKCLRDA INNQLRVTSK ALGEDSSLAG VSKGETPRLR FIDQNIRQQR  840
AVQHLGMLEQ HAWRPQRGLP ERSVSVLRAW LFEHFLHPYP TDADKHMLAR QTGLSRSQVS  900
NWFINARVRL WKPMVEEMYL QESKDSSEMD ITLKRKENDS RDKTECLGSE KNMNKHGKMM  960
LDGGSDKQSA SEGGGSKYEH GGSTSQTGQE SSGTAMSMPL ESQFRPAEKV DGMREVDMSA  1020
NRNVRETQSL SSVNVATIGV DRRLEETPGC QNFDHSTKRF RNDDRNKLQG FENTIDFSSY  1080
NHSSAIGGRY SHEDFTPRQF GSAGVSLTLG LRHSGGQEKY SNGLYLSRDD SAPDSNHHYN  1140
IHDSHDQGYG SGFDAQDMQF RKHVGSQLMH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	6e-16	859	916	1	58	Homeobox protein Meis1
4xrs_B	6e-16	859	916	1	58	Homeobox protein Meis1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF678220	0.0	EF678220.1 Picea sitchensis clone WS0285_A17 unknown mRNA.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP133	16	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	5e-98	BEL1-like homeodomain 4