PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10435231g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 327aa MW: 34837.4 Da PI: 6.717 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.5e-11 | 154 | 196 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk K++ ++iL A eY+++L MA_10435231g0010 154 MAERRRRKKLNDRLLMLRSVVPKV-----SKMDRSSILGDAAEYLQEL 196 79*********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.494 | 147 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.03E-15 | 150 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.4E-13 | 153 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.2E-9 | 153 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.60E-11 | 154 | 200 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-13 | 154 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 6.22E-6 | 257 | 316 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MEMEMAWTGL LDKNFSSLRA MLDGGGEDGF YATMDANGWT LEALLGSSLS SPGGSVLSNV 60 GGSINASHHL SCSMSTSVHT LEGPGGSDQL GLLHRRDVIE SGIHKNGGNQ KPNGGVGERG 120 ADSVVAVDSN NNKYVNAANA GRGKKNGLPA KNLMAERRRR KKLNDRLLML RSVVPKVSKM 180 DRSSILGDAA EYLQELLQRI GDLHTELTSG SCNSKPLADT LADFPCRLNG ELQASFSSTV 240 EPAKVEVRSR EGKSLHINMF CSEKPGLLLS TIRALDELGL DVKQAVISCL NGFALDVLQE 300 KQSMGGDVTA EEIKTLLLHT AGYQAGL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 162 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA (PubMed:18641265). Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016695597.1 | 1e-71 | PREDICTED: transcription factor ICE1-like isoform X2 | ||||
Refseq | XP_020595212.1 | 3e-71 | transcription factor ICE1-like | ||||
Swissprot | Q9LPW3 | 9e-66 | SCRM2_ARATH; Transcription factor SCREAM2 | ||||
TrEMBL | D5A934 | 7e-89 | D5A934_PICSI; Uncharacterized protein | ||||
STRING | Gorai.007G044800.1 | 8e-70 | (Gossypium raimondii) | ||||
STRING | cassava4.1_005473m | 8e-70 | (Manihot esculenta) | ||||
STRING | GSMUA_Achr6P08070_001 | 2e-70 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP557 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12860.1 | 8e-55 | bHLH family protein |