PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10434837g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | HB-other | ||||||||
Protein Properties | Length: 257aa MW: 29877.8 Da PI: 4.6571 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.5 | 1.3e-09 | 196 | 247 | 4 | 55 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 + +++k q+ +Le++++++r p+ ++ + + ++L+ + + WF +R++e MA_10434837g0010 196 KKRMKKVQIATLEKVYRRTRRPTDAMVDNIIHLTNLPRKAIVKWFSDKRMQE 247 445899*******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.815 | 190 | 250 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-10 | 193 | 247 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.3E-4 | 194 | 254 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.27E-7 | 195 | 247 | No hit | No description |
Pfam | PF00046 | 3.5E-7 | 196 | 247 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-8 | 197 | 248 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002229 | Biological Process | defense response to oomycetes | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009682 | Biological Process | induced systemic resistance | ||||
GO:0009787 | Biological Process | regulation of abscisic acid-activated signaling pathway | ||||
GO:0010118 | Biological Process | stomatal movement | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:2000022 | Biological Process | regulation of jasmonic acid mediated signaling pathway | ||||
GO:2000071 | Biological Process | regulation of defense response by callose deposition | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MCRYCFNCCS FPTWKAHKNE EDEDSLDEDA LEALFIQLEK DLEKDQLSDD DENDMITDEE 60 ISKFEEELKE AISDIDDDEE ALDEYPPLKL ENWQLQKLAA ALEVGRRKVS VKILTEELGL 120 DREIVLDLLR NPPPELLLIQ PVKDNTGSIQ SAIKPDNDNV GSSGSDRKLV DPTSKEASKN 180 EAEVPIFFNQ VQWNRKKRMK KVQIATLEKV YRRTRRPTDA MVDNIIHLTN LPRKAIVKWF 240 SDKRMQESPK VVYKKRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF087807 | 0.0 | EF087807.1 Picea sitchensis clone WS02753_G02 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9P2C9 | 1e-171 | A9P2C9_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6927 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11270.1 | 2e-40 | overexpressor of cationic peroxidase 3 |