PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10434815g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GATA
Protein Properties Length: 327aa    MW: 35632.6 Da    PI: 5.4666
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10434815g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.41.5e-16221254134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       C++C +  Tp+WR gp g+ktLCnaCG+++++ +
  MA_10434815g0010 221 CTHCLSQRTPQWRLGPLGPKTLCNACGVRFKSGR 254
                       *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.103.9E-13214253IPR013088Zinc finger, NHR/GATA-type
SMARTSM004011.5E-12215265IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.398215251IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-15216278No hitNo description
CDDcd002021.49E-13220277No hitNo description
PfamPF003201.4E-14221254IPR000679Zinc finger, GATA-type
PROSITE patternPS003440221246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGMDIARNDS SFGGFPGLES PVEWGEAAKS FDLSSIGDVF RIEDLSEFSN EDIAGPIPSG  60
SLSSSLSSPG SSQDKAKHTI CTSFLNEGDF ICPPYEDGIG LEWLSDFVED SFAATGSSNS  120
GSLADLSDDI IDDGGEKKKQ SPTDEAIIPQ VPPIKETPRS QRAVPGRPRS KRPRSSGAPI  180
RGWSTSEDYA LRHEGGMKTV TGTGAINNYQ SSASQQQPRR CTHCLSQRTP QWRLGPLGPK  240
TLCNACGVRF KSGRLFPEYR PAKSPTFIRY IHSNSHKKVL EMRNQEADDL ESLVFDPQLS  300
DAKQQDQGLL KVKIKLTGLD NLSFQSN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0875700.0EF087570.1 Picea sitchensis clone WS02751_L09 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257696.12e-49PREDICTED: GATA transcription factor 2-like
STRINGXP_010257696.18e-49(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.16e-38GATA transcription factor 4