PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10434815g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | GATA | ||||||||
Protein Properties | Length: 327aa MW: 35632.6 Da PI: 5.4666 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.4 | 1.5e-16 | 221 | 254 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C + Tp+WR gp g+ktLCnaCG+++++ + MA_10434815g0010 221 CTHCLSQRTPQWRLGPLGPKTLCNACGVRFKSGR 254 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 3.9E-13 | 214 | 253 | IPR013088 | Zinc finger, NHR/GATA-type |
SMART | SM00401 | 1.5E-12 | 215 | 265 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.398 | 215 | 251 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.5E-15 | 216 | 278 | No hit | No description |
CDD | cd00202 | 1.49E-13 | 220 | 277 | No hit | No description |
Pfam | PF00320 | 1.4E-14 | 221 | 254 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 221 | 246 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MGMDIARNDS SFGGFPGLES PVEWGEAAKS FDLSSIGDVF RIEDLSEFSN EDIAGPIPSG 60 SLSSSLSSPG SSQDKAKHTI CTSFLNEGDF ICPPYEDGIG LEWLSDFVED SFAATGSSNS 120 GSLADLSDDI IDDGGEKKKQ SPTDEAIIPQ VPPIKETPRS QRAVPGRPRS KRPRSSGAPI 180 RGWSTSEDYA LRHEGGMKTV TGTGAINNYQ SSASQQQPRR CTHCLSQRTP QWRLGPLGPK 240 TLCNACGVRF KSGRLFPEYR PAKSPTFIRY IHSNSHKKVL EMRNQEADDL ESLVFDPQLS 300 DAKQQDQGLL KVKIKLTGLD NLSFQSN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF087570 | 0.0 | EF087570.1 Picea sitchensis clone WS02751_L09 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010257696.1 | 2e-49 | PREDICTED: GATA transcription factor 2-like | ||||
STRING | XP_010257696.1 | 8e-49 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 6e-38 | GATA transcription factor 4 |