PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10434609g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 94aa    MW: 10590 Da    PI: 8.4822
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10434609g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.9e-084582544
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                      +++E++l+ +++k+lG + W++Ia +++  R  ++++++ 
  MA_10434609g0010 45 SADEEDLINRLHKLLGDR-WSLIAGRLP-WRRVEEIQNYC 82
                      789*************99.*********.*******9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.5E-44088IPR001005SANT/Myb domain
SuperFamilySSF466891.11E-54381IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-84581IPR009057Homeodomain-like
PfamPF002498.9E-74583IPR001005SANT/Myb domain
CDDcd001673.17E-54584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MDSMQRISQP KAEGDYNVIR IGAGGGISLC ESSAKKSTCY AHDISADEED LINRLHKLLG  60
DRWSLIAGRL PWRRVEEIQN YCKMRYTAIA SSSR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1110331e-48BT111033.1 Picea glauca clone GQ03231_J08 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NQX02e-18A9NQX0_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4207823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01060.21e-14CAPRICE-like MYB3