PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10434450g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 452aa    MW: 50115 Da    PI: 5.0018
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10434450g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.2e-31245301258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       dDgy+WrKYGqK +k+s++prsYYrCt ++C +kk+vers edp++++itYeg H h
  MA_10434450g0010 245 DDGYKWRKYGQKAIKNSPHPRSYYRCTNPRCFAKKQVERSVEDPETITITYEGLHMH 301
                       8*******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.4E-29233302IPR003657WRKY domain
SuperFamilySSF1182901.96E-26242302IPR003657WRKY domain
SMARTSM007741.0E-35244303IPR003657WRKY domain
PROSITE profilePS5081126.498244304IPR003657WRKY domain
PfamPF031067.1E-25245301IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MDSNMQSFCG IGKRKLHDQA SEISDCWDYC CSLPILKKFN AVSPQKNSVD SPSEDNIILD  60
DDFDFSYMSE LLHDDQDVGR FPDVNMKSFD QSSQGGCDYV DGFLQSENPE NISISAMNAD  120
NLKFLNGNQE IETGSACTNT HSFPTLMDVQ SALLRQNQSG AVSATDSVSN SSSKSCVFNS  180
FYAGALRSQA WFPTSGLKRD QDIMSQSSYR SFSKSIDELF YRRLNRAKSE SRYSLKIKCP  240
GSNIDDGYKW RKYGQKAIKN SPHPRSYYRC TNPRCFAKKQ VERSVEDPET ITITYEGLHM  300
HYSYSQIQLT QPNNNSSLLR RLQGDNSIII KDENPSKDHK GYYNNNNVDE GAVDPKTASS  360
SFKTDAVEGW AATVAVAQRH QQEEEVEDQV EENCQTLNID GRRHAFGGGC GGDIGVVEHG  420
GGRADGLLQD IVPLGIINPF SSSSSSSSSS SP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-202443011774Probable WRKY transcription factor 4
2lex_A4e-202443011774Probable WRKY transcription factor 4
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1181710.0BT118171.1 Picea glauca clone GQ04003_D10 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-29WRKY DNA-binding protein 49