PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10434389g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 257aa MW: 29502.4 Da PI: 6.3009 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.4 | 3.8e-16 | 121 | 176 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HH.HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsae.ereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ + ++ LAk+l+L rqV vWFqNrRa+ k MA_10434389g0010 121 RKKLRLSKEQSALLEESFREHSTLNPQkQKNALAKQLNLRPRQVEVWFQNRRARTK 176 778899******************97526889**********************98 PP | |||||||
2 | HD-ZIP_I/II | 120.6 | 8.1e-39 | 121 | 212 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq++lLEesF+e+++L+p ++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk MA_10434389g0010 121 RKKLRLSKEQSALLEESFREHSTLNPqKQKNALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELR-ALK 212 69***********************945799*********************************************************9.565 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.985 | 117 | 178 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-11 | 119 | 182 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.39E-15 | 120 | 186 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-15 | 121 | 176 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.8E-13 | 121 | 176 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.51E-13 | 121 | 179 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 153 | 176 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.1E-11 | 178 | 212 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 5.3E-22 | 178 | 221 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
TPPLPLELLP FRPIASRVGT PPAPSPPFLW FMTNNCREEV TVAETNLSGV VRGGIDMNQV 60 PSTNEYEESS VLQVDALRVV DNGPMTVKRE RERAFDLEAE RDRTCDVSSR TSDEEEIGST 120 RKKLRLSKEQ SALLEESFRE HSTLNPQKQK NALAKQLNLR PRQVEVWFQN RRARTKLKQT 180 EVDCEVLKRC CENLTEENRR LQKELQELRA LKAAPQPCVI GQDNYYMPLP ATTLTXXXXW 240 PLHCDVDSLE CSDRHQK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 125 | TRKKLRL |
2 | 170 | 178 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF085921 | 0.0 | EF085921.1 Picea sitchensis clone WS0271_A17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024379716.1 | 3e-76 | homeobox-leucine zipper protein HAT4-like | ||||
Swissprot | A2Z1U1 | 8e-58 | HOX11_ORYSI; Homeobox-leucine zipper protein HOX11 | ||||
Swissprot | Q67UE2 | 4e-57 | HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11 | ||||
TrEMBL | A9NX56 | 1e-159 | A9NX56_PICSI; Uncharacterized protein | ||||
STRING | PP1S42_217V6.1 | 1e-75 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP196 | 16 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-58 | homeobox from Arabidopsis thaliana |