PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10434193g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 180aa MW: 19839.6 Da PI: 5.6687 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.7 | 1.7e-42 | 15 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C ++Cv+apyfp+++ +kf vh++FGasn++kll++lp e+r+da+ss+vyeA+ar+rdPvyG++g+ +++q+ql+ql+++ MA_10434193g0010 15 PCAACKMLRRRCGEKCVFAPYFPSNDLHKFVTVHRIFGASNIIKLLQELPAERRTDAVSSMVYEANARLRDPVYGCAGIAFQMQSQLCQLQSQ 107 7******************************************************************************************** PP DUF260 94 lallkee 100 la++++e MA_10434193g0010 108 LATAQAE 114 ***9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.209 | 14 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-41 | 15 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MASIVGGFRA HTPSPCAACK MLRRRCGEKC VFAPYFPSND LHKFVTVHRI FGASNIIKLL 60 QELPAERRTD AVSSMVYEAN ARLRDPVYGC AGIAFQMQSQ LCQLQSQLAT AQAEILTMRL 120 QQANLLALIT GSSDSGETPR PLSPSGSAVS QESNDQQTDL IYFEGEDPLQ LWDDSVWTQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-39 | 14 | 116 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-39 | 14 | 116 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF084557 | 0.0 | EF084557.1 Picea sitchensis clone WS0271_N08 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019227600.1 | 3e-61 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 5e-55 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A9NTB0 | 1e-110 | A9NTB0_PICSI; Uncharacterized protein | ||||
STRING | GLYMA15G05030.1 | 1e-58 | (Glycine max) | ||||
STRING | GSMUA_Achr7P15500_001 | 3e-58 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-48 | LOB domain-containing protein 1 |