PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10434139g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 308aa MW: 34643.5 Da PI: 5.9485

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10434139g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.4	3.5e-50	7	146	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee..........vikevdiykvePwdLp..kkvkaeekewyfFsk.rdkkyatgkrknratks 80 lppGfrFhPtdeelv++yL++k+++++ + ++ +i+++d+yk+eP+dL +++++++++w+fF++ ++kky++g+rknrat+ MA_10434139g0010 7 LPPGFRFHPTDEELVCYYLRRKLSKSTSKSKSksesesvylnAITDIDLYKYEPSDLAarACFQGGDRQWFFFTEgNRKKYPNGSRKNRATEG 99 79********************9995443345667777768**********853488999***983567899******* PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWk+tgkd++vls +g+ vg+kktLvf++gr+p+ge+t+Wvmheyrl MA_10434139g0010 100 GYWKTTGKDRPVLS-RGAIVGMKKTLVFHRGRSPRGERTNWVMHEYRL 146 **********.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.16E-55	4	170	IPR003441	NAC domain
PROSITE profile	PS51005	55.66	7	170	IPR003441	NAC domain
Pfam	PF02365	3.0E-28	8	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MGDLNHLPPG FRFHPTDEEL VCYYLRRKLS KSTSKSKSKS ESESVYLNAI TDIDLYKYEP 60 SDLAARACFQ GGDRQWFFFT EGNRKKYPNG SRKNRATEGG YWKTTGKDRP VLSRGAIVGM 120 KKTLVFHRGR SPRGERTNWV MHEYRLIDDE AAESSSAGND RFVLCRVFLK SGSSAKPGEQ 180 HGALLSREDS RSTDNQSALV TENKQYYDVM LSPAGEGEVE ERYSPLGPLT AASEERTIPL 240 DDDLSKFLLE CLNEPDNEEF LKCGGFYADP DLFWIRGSAD PVPKPDGSGN IAKHVDFSTH 300 DADTMYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-46	6	176	14	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (Ref.6, PubMed:24323506, PubMed:25219309). Promotes reactive oxygen species (ROS) production during drought-induced leaf senescence. In response to abscisic acid (ABA)-mediated drought stress signals, binds directly to the promoters of RBOHC and RBOHE genes, encoding ROS biosynthetic enzymes, resulting in ROS accumulation and triggering leaf senescence via programmed cell death (PCD). ROS-induced leaf senescence sustains plant survival under drought conditions (PubMed:22313226). Involved in heat stress response. Modulates PCD through a ROS-mediated positive feedback control under heat stress conditions. This may provide an adaptation strategy for plant survival under extreme heat stress conditions (PubMed:25219309). Acts as repressor in preventing anther dehiscence during stamen development by suppressing genes that participate in jasmonic acid (JA) biosynthesis, such as DAD1, AOS, AOC3, OPR3 and 4CLL5/OPCL1 (PubMed:24323506). {ECO:0000269\|PubMed:22313226, ECO:0000269\|PubMed:24323506, ECO:0000269\|PubMed:25219309, ECO:0000269\|Ref.6}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) (PubMed:22313226, PubMed:25219309). Induced by heat shock (PubMed:25219309). Induced by cold, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:22313226, ECO:0000269\|PubMed:25219309}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT116552	0.0	BT116552.1 Picea glauca clone GQ03801_N14 mRNA sequence.
GenBank	EF677829	0.0	EF677829.1 Picea sitchensis clone WS02775_M02 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010694513.1	9e-63	PREDICTED: NAC domain-containing protein 78
Swissprot	Q949N0	3e-59	NAC53_ARATH; NAC domain-containing protein 53
TrEMBL	B8LPQ0	0.0	B8LPQ0_PICSI; Uncharacterized protein
STRING	XP_010694513.1	4e-62	(Beta vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10500.1	2e-60	NAC domain containing protein 53

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell, 2014. 26(12): p. 4656-79 [PMID:25549671] Gladman NP,Marshall RS,Lee KH,Vierstra RD The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis. Plant Cell, 2016. 28(6): p. 1279-96 [PMID:27194708] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]