PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10434101g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 177aa    MW: 19987.4 Da    PI: 4.7453
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10434101g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.3e-172372255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k +g+Wv+eIr p   + +  r++lg+++t+e+Aa+a++ a+ +l+g
  MA_10434101g0010 23 QFKGIRMRK-WGKWVSEIRMP---N-CtGRIWLGSYDTPEKAARAYDFAAFCLRG 72
                      69*****99.**********8...3.46*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.5E-292280IPR001471AP2/ERF domain
PROSITE profilePS5103221.5092380IPR001471AP2/ERF domain
CDDcd000182.54E-292380No hitNo description
SMARTSM003802.8E-332386IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-202381IPR016177DNA-binding domain
PfamPF008471.4E-102472IPR001471AP2/ERF domain
PRINTSPR003671.2E-82435IPR001471AP2/ERF domain
PRINTSPR003671.2E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MTKPSPNQNS HSRPETRSLK SRQFKGIRMR KWGKWVSEIR MPNCTGRIWL GSYDTPEKAA  60
RAYDFAAFCL RGSKAKLNFP LFTSEIPCAS SLSPQQIQAA AAKFAAEEFQ LPSEDDAEFS  120
FSGSEAEWGN DGQQIWEENC PAFWDSILLE CLESGKSPNL NDFPPLDESM EYFGVQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-172081264ATERF1
3gcc_A2e-172081264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0835910.0EF083591.1 Picea sitchensis clone WS02729_D14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843906.18e-37ethylene-responsive transcription factor ERF017
SwissprotQ9C5913e-33ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA9NQM11e-115A9NQM1_PICSI; Uncharacterized protein
STRINGERN055813e-36(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-28ERF family protein