PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10433428g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 537aa    MW: 57585.2 Da    PI: 6.733
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10433428g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.3e-12467512655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk Lq
  MA_10433428g0010 467 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDEAVDYIKFLQ 512
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.408461511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16464524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-12465516No hitNo description
Gene3DG3DSA:4.10.280.106.2E-16466522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9467512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-14467517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MYSSQSVAEN AKLPPKSVSR STSNGFEMGY CYSEKGEQGL MQQVDESNRH SASTGHSTTS  60
IHMDINLSTQ VSSGLMRYRS APSSFLASLV DEAGDYLPRI AGSQEPDHAV IARYFSADSS  120
SLTSDSSSGV IQSHGLDRSA AHKEPKMFSR MNAGANAGLK SAGAGNEDVG KHRLASILEN  180
GPEPEPEPEP EPEPGEVLSQ DSFCNSPMMY RAQDSRSGVE NSYRMNPLCC NPLVSSGGRI  240
NNLPLTAVKS NLVRHSSSPA GLLSRIAGVD GRGIYENGYS IGAVKNMGNL SSENGSSVAP  300
NRLASQMNFM RQGSSTSGLS SQLSDMGLPQ VVDKLNMPVG SSADSLGGSS SDDGSLSNGN  360
GVQRYMSSFP VGSWDDAVIV SEGFAGMQNG AAFSARKRVR DLNGKMMPAL NLAESQKGEP  420
ISHLPAGLNH QFSLTKSPSE IAMEKLLQDS VPCKIRAKRG CATHPRSIAE RVRRTRISER  480
MRKLQELVPN MDKQTNTADM LDEAVDYIKF LQTQVRELSE NQPKCDCSCK MNASETT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1038770.0BT103877.1 Picea glauca clone GQ02803_I06 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ9SQ791e-111Q9SQ79_PINTA; Helix-loop-helix protein 1A
STRINGVIT_06s0004g01740.t012e-75(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.18e-46bHLH family protein