PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10433425g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 25819.6 Da PI: 4.7333 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.4 | 5.5e-11 | 193 | 235 | 1 | 49 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 s+ykGV + +grW A+I++ ++r++lg+f +++Aa+a+++a MA_10433425g0010 193 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNHEQDAARAYDRA 235 78****9888.8*********3.....5**********99*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.7E-12 | 193 | 237 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.7E-6 | 194 | 235 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-15 | 194 | 236 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.422 | 194 | 240 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-9 | 194 | 240 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MMTCLRASTL AMPYSGIEFG DAAGFEPDVN CVVDFVIDVR STLEIGRQGT AMEKSSYSAV 60 AVSTQEPPYN FLKVVGNDNK RLSLGRCYSP VEAEISANLS ELNCNSTIFK KAMGTDSTRA 120 DSEEAGSLTE DHDSDSSLVA AGKAISSNAS SSLADRAELE GMGSGISAVS SENIHITPSV 180 QGDQEKCKKL PSSQYKGVVP QPNGRWGAQI YEKHQRVWLG TFNHEQDAAR AYDRAXXXXT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 3e-23 | RAV family protein |