PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10433418g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 214aa MW: 24420.9 Da PI: 9.1027 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.1e-12 | 22 | 64 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ErrRR+++N+ + +Lr l+P+ + K++Ka+iL A+eY+ +L MA_10433418g0010 22 VSERRRRQKMNKLLYTLRALVPNiS------KMDKASILGDAIEYVDKL 64 57*********************66......**************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.85E-12 | 13 | 69 | No hit | No description |
PROSITE profile | PS50888 | 16.304 | 15 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-17 | 18 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.1E-16 | 21 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-17 | 21 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-10 | 22 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MELADERSIL RYRKPKLSKN VVSERRRRQK MNKLLYTLRA LVPNISKMDK ASILGDAIEY 60 VDKLKKQVER AESDVQSTNV SAQSADPRVE ETDSFTVRLD AANRYGSDRK YHVQVEAHVV 120 EESIVEVRIR CKQEHGILFH LTRALESLPF RLKNVTFSTL NECLLLLNAV LQADHCFPAM 180 SDYGVRQSIE DSFGKQGLIL TSGNSSGPLW QELK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-15 | 20 | 74 | 9 | 63 | Transcription factor MYC2 |
5gnj_B | 1e-15 | 20 | 74 | 9 | 63 | Transcription factor MYC2 |
5gnj_E | 1e-15 | 20 | 74 | 9 | 63 | Transcription factor MYC2 |
5gnj_F | 1e-15 | 20 | 74 | 9 | 63 | Transcription factor MYC2 |
5gnj_G | 1e-15 | 20 | 74 | 9 | 63 | Transcription factor MYC2 |
5gnj_I | 1e-15 | 20 | 74 | 9 | 63 | Transcription factor MYC2 |
5gnj_M | 1e-15 | 20 | 74 | 9 | 63 | Transcription factor MYC2 |
5gnj_N | 1e-15 | 20 | 74 | 9 | 63 | Transcription factor MYC2 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 61 | 66 | DKLKKQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT115111 | 0.0 | BT115111.1 Picea glauca clone GQ03609_I03 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP557 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12860.1 | 3e-20 | bHLH family protein |