PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10433310g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 268aa MW: 29460.7 Da PI: 5.8737 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.7 | 9.3e-16 | 58 | 107 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+Wv+eI++p++ ++r lg+f+t+e+Aa+a++ a +l+g MA_10433310g0010 58 TYRGVRRRS-WGKWVSEIKEPKK---KTRTCLGSFDTPEMAARAYDVAEVYLKG 107 69****887.**********854...6*********************988877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-26 | 58 | 117 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-9 | 58 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.969 | 58 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.92E-18 | 58 | 117 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.0E-28 | 58 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-8 | 59 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.88E-26 | 59 | 118 | No hit | No description |
PRINTS | PR00367 | 7.1E-8 | 81 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MDKEVSSLPK TMVSSSTDTG ASSKSASIAK GGVKRIRTQD EAAPSPPQER TLKVQYPTYR 60 GVRRRSWGKW VSEIKEPKKK TRTCLGSFDT PEMAARAYDV AEVYLKGKKH ALLNFPELID 120 HIPNPISLHP RHIHGAAAEA AIAFNLASAG NFEWPSDSNK RTRRNPRNPT ASNDPSSSSH 180 QLSTGISSNY ETASVEVSGQ TDSSESSSVC TPTECVGDSE RVVVEEDLFE SFNLLIDLAE 240 ALLLSPPPLF SIHEEEHNLE EGFLWSDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 50 | 116 | 6 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT109837 | 0.0 | BT109837.1 Picea glauca clone GQ03212_O03 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5ABJ6 | 1e-115 | D5ABJ6_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 4e-31 | ERF family protein |