PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10433116g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NF-X1 | ||||||||
Protein Properties | Length: 470aa MW: 52326.1 Da PI: 8.0817 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 18.6 | 4.1e-06 | 209 | 227 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H C lCH+GpCppCp+ MA_10433116g0010 209 CG-HECVLLCHPGPCPPCPK 227 **.***************96 PP | |||||||
2 | zf-NF-X1 | 23.4 | 1.3e-07 | 261 | 280 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H+C+++CH GpCppC++ MA_10433116g0010 261 CGLHRCEEKCHDGPCPPCQK 280 ******************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS01359 | 0 | 92 | 163 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00438 | 0.0043 | 209 | 227 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0027 | 209 | 226 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.66E-9 | 251 | 299 | No hit | No description |
SMART | SM00438 | 1.8E-4 | 261 | 280 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 2.5E-6 | 261 | 278 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.60E-8 | 304 | 345 | No hit | No description |
SMART | SM00438 | 0.0031 | 314 | 333 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.088 | 316 | 331 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.01E-8 | 358 | 407 | No hit | No description |
SMART | SM00438 | 0.27 | 368 | 388 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.024 | 368 | 387 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.86E-7 | 411 | 459 | No hit | No description |
SMART | SM00438 | 0.19 | 421 | 440 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0036 | 421 | 439 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 2.5 | 442 | 458 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 130 | 448 | 465 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000037 | Biological Process | regulation of stomatal complex patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MESTRSRAPP AWSTNSLTKT KRNNEPTNDP QIPTHEYDSD TSLEEDPKGN DQNLEESIFS 60 EYLSIHGKSS ADVNLSKIKN LLAASKIGAI SCLICLEKVR SIDPIWDCKV GCHAIFHLIC 120 IQEWARQASN SAAERSMARL SRDQFPLAAS AALENSSWHC PKCRVDYPQS QIPRQYKCFC 180 GKLDDPPNDP WITPHTCGEI CGKPLQRNCG HECVLLCHPG PCPPCPKLVK SRCFCGAVSD 240 VRRCGLKDFS CNRSCARPLA CGLHRCEEKC HDGPCPPCQK TGVYSCLCGK VEKDSLCSQS 300 EFRCENPCER ELSCRKHKCM KGCHSGPCGE CELQGRRTCP CGKVEHNGLS CDAAVPTCGS 360 TCEKMLLCSL HRCPERCHSG SCVETCRIAT TKSCRCGSLK KQVPCYQDLV CERRCQRVRD 420 CGRHACKRRC CDGDCPLCSE ICGRKLRCNN HKCPAPCHRY FRCFHSNSLI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF085488 | 0.0 | EF085488.1 Picea sitchensis clone WS02717_C21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010253736.1 | 0.0 | PREDICTED: NF-X1-type zinc finger protein NFXL2 | ||||
Swissprot | Q9FFK8 | 1e-163 | NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2 | ||||
TrEMBL | A0A1U7ZIL2 | 0.0 | A0A1U7ZIL2_NELNU; NF-X1-type zinc finger protein NFXL2 | ||||
STRING | XP_010253736.1 | 0.0 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6325 | 17 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05660.1 | 1e-157 | sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors |