PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10432580g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ARF
Protein Properties Length: 873aa    MW: 96862.6 Da    PI: 6.0445
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10432580g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.9e-24161262199
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       f+k+lt sd++++g +++ +++a+e+     +++++ s++l+ +d++g +W++++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +
  MA_10432580g0010 161 FCKTLTASDTSTHGGFSVLRRHADEClppldMSQQPPSQELVAKDLHGVEWRFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RGE 251
                       99*****************************55566678*************************************************..449 PP

                       EE..EEEEE-S CS
                B3  89 efelvvkvfrk 99 
                       ++el+v+v+r+
  MA_10432580g0010 252 NGELRVGVRRA 262
                       999*****996 PP
2Auxin_resp123.11.9e-40287369183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       a+ha+st+++F+v+Y+Pr+s+seF++++++++ka+k+++svGmRfkm+fe+e+++e+r++Gt+vg+ d+dpv+W++SkWr+Lk
  MA_10432580g0010 287 ASHAVSTRTMFSVYYKPRTSPSEFIIPYDQYMKAMKINFSVGMRFKMKFEGEEVPEQRFTGTIVGICDVDPVSWRDSKWRCLK 369
                       789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-43154290IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-42155276IPR015300DNA-binding pseudobarrel domain
CDDcd100176.44E-22160261No hitNo description
PfamPF023621.2E-21161262IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012161263IPR003340B3 DNA binding domain
SMARTSM010198.4E-24161263IPR003340B3 DNA binding domain
PfamPF065071.2E-37287369IPR010525Auxin response factor
PfamPF023091.4E-11742850IPR033389AUX/IAA domain
SuperFamilySSF542772.94E-12758836No hitNo description
PROSITE profilePS5174526.82759843IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MPDLGANNGG SNQSNSSNGC VDGYSSKPNE GGLVLAQIGG SHGYQNSSPS AHDALYEELW  60
HACAGPLVTL PRIGERVFYF PQGHMEQVEA STNQGADQHM PLFNLPYKIL CRVINVQLKA  120
ELDTDEVFSQ ITLVPEAEQD ESSVDKEPLP PLPPKPLVYS FCKTLTASDT STHGGFSVLR  180
RHADECLPPL DMSQQPPSQE LVAKDLHGVE WRFRHIFRGQ PRRHLLTTGW SVFVSSKRLV  240
AGDAFIFLRG ENGELRVGVR RAMRQQNNVP SSVISSHSMH LGVIATASHA VSTRTMFSVY  300
YKPRTSPSEF IIPYDQYMKA MKINFSVGMR FKMKFEGEEV PEQRFTGTIV GICDVDPVSW  360
RDSKWRCLKV QWDEISAIAR PERVSPWKLE SSLTPAAVNS LPVARGKRPR PNILPSSSDL  420
SALDKASVDS TQVHRFPRVL QGQEVMTLGG SLGDSDLESC QKMVVWGSKL DDVKAEGMGC  480
QRRLVSENWM PPLRHDSLYS DAFPSFQPMG EVPEYRGSLT NSILEDGQQS RLSRKQFQDQ  540
EGKIVDASGL WSTSFPNSLQ EMCESNRKMS VTSAAQSHNQ SGNVRWTGLN GHPQFSNIGM  600
EASVGNWPMH MISPCQSEVS GAHGGVDRNA ARTLQVSNTG ATEQQPSFDL WEMSKGAEVV  660
SRQIDSNCKL FGFHLIDNST GGELNPSKIR GSVNEEELQG AAHASTEILS QFVEPDQQSE  720
QTKTAKSDVP AGSCEQEKTS PRSSQETQYR ASAQSNPTRS CTKVHKQGSA LGRAVDLTKF  780
EGYTDLIREL EVMFNFEGQL QDASKGWQVV YTDDEGDMML VGDDPWQEFC SMVRKIFIYT  840
REEVEKMTPR APPNMKLPGH SEEEKVARET PTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1795339017353Auxin response factor 1
4ldw_A1e-1795339017353Auxin response factor 1
4ldw_B1e-1795339017353Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406410KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1165820.0BT116582.1 Picea glauca clone GQ03802_H23 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942378.10.0auxin response factor 23
SwissprotQ94JM30.0ARFB_ARATH; Auxin response factor 2
TrEMBLA0A0C9RYI40.0A0A0C9RYI4_9SPER; Auxin response factor
STRINGAquca_100_00036.10.0(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Chao WS,Doğramaci M,Foley ME,Horvath DP,Anderson JV
    Selection and validation of endogenous reference genes for qRT-PCR analysis in leafy spurge (Euphorbia esula).
    PLoS ONE, 2012. 7(8): p. e42839
    [PMID:22916167]
  2. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Lyons R, et al.
    Fusarium oxysporum triggers tissue-specific transcriptional reprogramming in Arabidopsis thaliana.
    PLoS ONE, 2015. 10(4): p. e0121902
    [PMID:25849296]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Zhao S,Zhang ML,Ma TL,Wang Y
    Phosphorylation of ARF2 Relieves Its Repression of Transcription of the K+ Transporter Gene HAK5 in Response to Low Potassium Stress.
    Plant Cell, 2016. 28(12): p. 3005-3019
    [PMID:27895227]
  8. Promchuea S,Zhu Y,Chen Z,Zhang J,Gong Z
    ARF2 coordinates with PLETHORAs and PINs to orchestrate ABA-mediated root meristem activity in Arabidopsis .
    J Integr Plant Biol, 2017. 59(1): p. 30-43
    [PMID:28074634]
  9. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  10. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  11. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]
  12. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  13. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]
  14. Sarkar Das S, et al.
    Expression dynamics of miRNAs and their targets in seed germination conditions reveals miRNA-ta-siRNA crosstalk as regulator of seed germination.
    Sci Rep, 2018. 8(1): p. 1233
    [PMID:29352229]