PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10432457g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ARR-B
Protein Properties Length: 678aa    MW: 74297.5 Da    PI: 6.5098
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10432457g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.42.9e-27406458356
           G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                       +++Wt +LH+rFv+aveqL G ++A+P++il+lmkv+gLt+++v+SHLQkYR++
  MA_10432457g0010 406 KVEWTMDLHRRFVQAVEQL-GVDQAIPSRILDLMKVDGLTRHNVASHLQKYRSH 458
                       899****************.********************************86 PP
2Response_reg32.93.4e-12161221109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedaleal 90 
                       vl+ d++   +   ++ le  +y +v ++++ +eal+ l +++  +++ l+ +   + + G+++l++      ++p i+++ ++  + + +++
  MA_10432457g0010  16 VLVLDEDSEAAAETKSRLEGFEY-VVSTFSNETEALAVLANETnsFHVALVEVTTGNsCGGFRFLQTAC----DIPTIMMSNRSCLSITMKCI 103
                       7999999999*************.***************888888************899999998754....599***************** PP

                       HTTESEEEESS--HHHHHH CS
      Response_reg  91 kaGakdflsKpfdpeelvk 109
                        +Ga++fl Kp+++++l +
  MA_10432457g0010 104 ALGASEFLQKPISEDKLKN 122
                       ***************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.0E-1612149No hitNo description
SuperFamilySSF521727.83E-1712133IPR011006CheY-like superfamily
SMARTSM004483.0E-414124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011021.22415128IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.2E-916122IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.89E-1017127No hitNo description
PROSITE profilePS5129415.008401460IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-26402461IPR009057Homeodomain-like
SuperFamilySSF466891.27E-16402461IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24404458IPR006447Myb domain, plants
PfamPF002492.7E-6406456IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MVSVAEWKDF PKGLRVLVLD EDSEAAAETK SRLEGFEYVV STFSNETEAL AVLANETNSF  60
HVALVEVTTG NSCGGFRFLQ TACDIPTIMM SNRSCLSITM KCIALGASEF LQKPISEDKL  120
KNIWQHVVHK AFSESGTVLS ESLKPIKATI VSMLQLGPEQ ANVKSKSAQN GESSGGIKAG  180
ATALHEVQSC VPTPTDSVKP ETSIDPCNSE KFPAPSTPQL EQGGRSPSEE DKTLRLDDAT  240
NLMVGTAHAD NNCGYETIRE VRLDAEATSA WSSQVDSPAS VKKEIQDMYR ISLKARNNSQ  300
SGLKPVDITS DQLGSGITSR GTSLHSRLET VDVHVVNASG IAEEEVGSAE GSKSDDENIE  360
KEAILSSYAC NEENVDSSTE DIKGKKNSAE HGCKKSNIVS SKKKFKVEWT MDLHRRFVQA  420
VEQLGVDQAI PSRILDLMKV DGLTRHNVAS HLQKYRSHRR HILPREDDVA SRRYWQHFDP  480
AWTRTKHDES WTRKGNPASG PILAYSPVQL HPAPHGTPVG PPLHVWGHPT IDQSGSHMWQ  540
QLHVATPTPW QAQDGSFWKH PGVCADAWGC PTVGMPFYPQ PMMKLPANHG HRSNPNSTIQ  600
GVSVQHTPIP DPLNNNGSSL WEKYINGHPP KEVIDEAFKE ALKNPWTPLP LGLKPPLMES  660
VMAELQRQGI SKIPPPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16400456157ARR10-B
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1078840.0BT107884.1 Picea glauca clone GQ03113_O04 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9166813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.51e-51ARR-B family protein