PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10432349g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ARF
Protein Properties Length: 471aa    MW: 52955 Da    PI: 7.1123
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10432349g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.66.4e-25175276199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++gr+W++++i+r++++r++lt+GW+ Fv+ ++L +gD v+F   ++
  MA_10432349g0010 175 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGREWRFRHIFRGQPRRHLLTTGWSVFVSYKRLVAGDAVLFL--RD 264
                       99****************************963.3445679************************************************..56 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       +++el+++++r+
  MA_10432349g0010 265 ENGELRLGIRRA 276
                       89999****997 PP
2Auxin_resp128.25.2e-42301382182
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                       +aha++tks+F+++YnPr+s++eFv++++k++k++++++s+GmRfkm+feted+ err++Gt+vg+ d+dp+rWpnS+Wrs 
  MA_10432349g0010 301 VAHAVATKSMFHIFYNPRTSPTEFVIPYHKYVKSFNHSFSIGMRFKMRFETEDATERRYTGTIVGIGDVDPMRWPNSEWRSF 382
                       79******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.88E-45164303IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-45167290IPR015300DNA-binding pseudobarrel domain
CDDcd100175.52E-24173275No hitNo description
PROSITE profilePS5086313.817175277IPR003340B3 DNA binding domain
SMARTSM010191.3E-25175277IPR003340B3 DNA binding domain
PfamPF023625.6E-23175276IPR003340B3 DNA binding domain
PfamPF065072.3E-38301383IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MESGLNDPHG LQHHSADDTN GDGDKRIVVE TGNSVCPELW HACAGPLISL PPKGSRVVYF  60
PQGHLEQIAD NELHKVGRGS FLNINQAVTP MAEEASSAAS LNIPPSSISQ AVNQQMLSYK  120
LPPQILCRVL NVNLHADQEM DEVYAQLTLV PDSEKSEKCI EEQLPVPPSS TPHMFCKTLT  180
ASDTSTHGGF SVPRRAAEDC FPPLDYSQQR PSQELVAKDL HGREWRFRHI FRGQPRRHLL  240
TTGWSVFVSY KRLVAGDAVL FLRDENGELR LGIRRASQQQ SSVPSSVLSS HGIHSGVLAA  300
VAHAVATKSM FHIFYNPRTS PTEFVIPYHK YVKSFNHSFS IGMRFKMRFE TEDATERRYT  360
GTIVGIGDVD PMRWPNSEWR SFKVLVKEFM CPKEISDCRW SGVDRFSAMF KFFQEKLPMA  420
DEGKRRVMCH ATSTSTCHAT SIQLMPQDDV SCHVNTHMSC HVSEEMVDCR W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1323338417333Auxin response factor 1
4ldw_A1e-1323338417333Auxin response factor 1
4ldw_B1e-1323338417333Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6786620.0EF678662.1 Picea sitchensis clone WS02930_G10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264744.11e-144PREDICTED: auxin response factor 4 isoform X1
RefseqXP_010264746.11e-144PREDICTED: auxin response factor 4 isoform X3
SwissprotQ94JM31e-141ARFB_ARATH; Auxin response factor 2
TrEMBLB8LRW70.0B8LRW7_PICSI; Auxin response factor
STRINGXP_010264744.11e-144(Nelumbo nucifera)
STRINGEFJ335381e-146(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-135auxin response factor 2
Publications ? help Back to Top
  1. Chao WS,Doğramaci M,Foley ME,Horvath DP,Anderson JV
    Selection and validation of endogenous reference genes for qRT-PCR analysis in leafy spurge (Euphorbia esula).
    PLoS ONE, 2012. 7(8): p. e42839
    [PMID:22916167]
  2. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Lyons R, et al.
    Fusarium oxysporum triggers tissue-specific transcriptional reprogramming in Arabidopsis thaliana.
    PLoS ONE, 2015. 10(4): p. e0121902
    [PMID:25849296]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Zhao S,Zhang ML,Ma TL,Wang Y
    Phosphorylation of ARF2 Relieves Its Repression of Transcription of the K+ Transporter Gene HAK5 in Response to Low Potassium Stress.
    Plant Cell, 2016. 28(12): p. 3005-3019
    [PMID:27895227]
  8. Promchuea S,Zhu Y,Chen Z,Zhang J,Gong Z
    ARF2 coordinates with PLETHORAs and PINs to orchestrate ABA-mediated root meristem activity in Arabidopsis .
    J Integr Plant Biol, 2017. 59(1): p. 30-43
    [PMID:28074634]
  9. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  10. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  11. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]
  12. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  13. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]
  14. Sarkar Das S, et al.
    Expression dynamics of miRNAs and their targets in seed germination conditions reveals miRNA-ta-siRNA crosstalk as regulator of seed germination.
    Sci Rep, 2018. 8(1): p. 1233
    [PMID:29352229]