PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10432269g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 548aa    MW: 60805.9 Da    PI: 4.7238
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10432269g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.82.8e-36421332102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y+++ed++++ ++sws+ gnsf+v+d+ ef++++Lp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll
  MA_10432269g0010  42 FLTKTYDMVEDPSTDPVVSWSSAGNSFIVWDPPEFSQNLLPRCFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLL 125
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  MA_10432269g0010 126 KNIHRRKP 133
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.2E-6338131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.76E-3638131IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-3939131IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.7E-194265IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.8E-3242131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MATPAEGSSS SPLGFVEENS QPLPPVPPQP MEGLQSSAIP PFLTKTYDMV EDPSTDPVVS  60
WSSAGNSFIV WDPPEFSQNL LPRCFKHNNF SSFVRQLNTY GFRKVDPDRW EFANEGFLRG  120
QKHLLKNIHR RKPVQIQQLS PPLGSCVEVG KFGLEGEVER LKRDKNVLML ELVRLRQQQH  180
NTECEMQAMN QRLQATEQRH QQMMSFLAKA MQNPSFLAQL VQQKEKRQLA AARKRKRLPK  240
QQQDLQGDLG PSNEGQIIKY QPNPSDNTQS LFIETLELGS DPKLEPPSSP LRALFSGSPG  300
KNIQENSTLA GEFIAGKGIE QMIQEGVPNP VAIEITSMSH LQPPSLAALA KGKHVESSQP  360
EDDLQGEEYL VSFGETVCSE EENTDLMGLE LDLPGDVDFC INKEEPKSVL GCEMSNDPFW  420
DQLFGGNPQS IQSGAEGEGE FPGTGMQGAE ERPSLVFKKV DPIVAVSRLV SLNPIQETIH  480
SLDLHAAAVF VTTCCPMYDD CVLKDIIGGR FVSVAIYLGA TFNTIPICTL SETDCLELPI  540
SHLSYWRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-273713115120Heat shock factor protein 1
5d5u_B1e-263713124129Heat shock factor protein 1
5d5v_B1e-263713124129Heat shock factor protein 1
5d5v_D1e-263713124129Heat shock factor protein 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1195043e-84BT119504.1 Picea glauca clone GQ04106_H17 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024368496.11e-114heat stress transcription factor A-2e-like
TrEMBLA0A176VRM41e-124A0A176VRM4_MARPO; Uncharacterized protein
TrEMBLA0A2R6VWN41e-124A0A2R6VWN4_MARPO; Uncharacterized protein
STRINGPP1S84_95V6.11e-114(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.13e-92heat shock transcription factor A1D