PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10432093g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 696aa    MW: 77720.4 Da    PI: 4.9964
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10432093g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS442.23.5e-1353296962374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lL+ecA+a+++   ++a++l+arl++ +   gdp+qRlaay++e+L a+l+ s+ ++yk+l+++e +   sse l+++++++ev+P++kf+
  MA_10432093g0010 329 KSLLIECAKAIAD--DRNADKLIARLRQVVDIFGDPLQRLAAYMVEGLVAKLHFSGGHIYKTLKCKEPT---SSELLSYMHILYEVCPYFKFG 416
                       689********97..689**************************************************9...9******************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       +++aN aI ea++ ++rvHiiDf+i qG QW++L+qa+a+R++g+p++RiTgv++p+s+  + + l+ +g+rL+k+Ae+++vpfef++l +  
  MA_10432093g0010 417 YVAANGAIAEAFKDKDRVHIIDFQIAQGSQWVTLIQAFAARQGGSPHVRITGVDDPNSEyaRGQGLQLVGKRLSKLAESCQVPFEFHAL-SVF 508
                       *********************************************************99999**************************5.888 PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                        +d+   +L+++ gEalaVn+ lqlh+++desv+++++rd++L++vk+l P+vv++veqea++n+++F+ rf+e+l+yy+a+f+sl+++lpr+
  MA_10432093g0010 509 GSDVYAGMLDIRAGEALAVNFPLQLHHMPDESVTTSNHRDRLLRMVKGLAPNVVTLVEQEANTNTAPFFPRFMETLSYYTAMFESLDVTLPRD 601
                       999****************************************************************************************** PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       s+er++vE+++l+r+ivnv+acegaer+erhe ++kWr+rl++aGFk++pls ++++++k +l+ ++++ yr+ e++++l+lgW dr L+++S
  MA_10432093g0010 602 SKERVSVEQHCLARDIVNVIACEGAERVERHELFGKWRSRLTMAGFKSYPLSAHVNSTIKVVLNSYNQN-YRLLEKDEALYLGWLDRDLIVAS 693
                       *******************************************************************66.*********************** PP

              GRAS 372 aWr 374
                       aW+
  MA_10432093g0010 694 AWK 696
                       **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.701302677IPR005202Transcription factor GRAS
PfamPF035141.2E-132329696IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MSLASACQES MRGDDNSYQT SSWYRGNLQG VPEISKSMSM QYTPEEISRN LQQLGWRRNS  60
FRSRSTDLSP KQDGNFAIDH TSMIGERIGG TTKMIDQRSP ISPLSPQGTG SDGLPQTNRS  120
QTSERNQMNV DLIQRSSHND GSYIHESFPY NSEHSHESSI CIQSSSGGSP LSSQHSQTYS  180
CDSRYFHTAE DAVDLVGNGY SDNEQPANLK ILEEIETALL GPDGDDTADM EYVYVDNAIH  240
SNSEWSLDAL SDFNDFLDQT SNPGYPQTNQ ADSSRAPDNL QQLPNHGDQN VKVETVNEVN  300
LKTEHCSPSN SHEEQPDINE LESPQGDVKS LLIECAKAIA DDRNADKLIA RLRQVVDIFG  360
DPLQRLAAYM VEGLVAKLHF SGGHIYKTLK CKEPTSSELL SYMHILYEVC PYFKFGYVAA  420
NGAIAEAFKD KDRVHIIDFQ IAQGSQWVTL IQAFAARQGG SPHVRITGVD DPNSEYARGQ  480
GLQLVGKRLS KLAESCQVPF EFHALSVFGS DVYAGMLDIR AGEALAVNFP LQLHHMPDES  540
VTTSNHRDRL LRMVKGLAPN VVTLVEQEAN TNTAPFFPRF METLSYYTAM FESLDVTLPR  600
DSKERVSVEQ HCLARDIVNV IACEGAERVE RHELFGKWRS RLTMAGFKSY PLSAHVNSTI  660
KVVLNSYNQN YRLLEKDEAL YLGWLDRDLI VASAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6033469525378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1100350.0BT110035.1 Picea glauca clone GQ03215_B19 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029116878.10.0scarecrow-like protein 21
RefseqXP_029116879.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A0B4U8K10.0A0A0B4U8K1_PINRA; SCL10
STRINGGLYMA02G47640.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP14091447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]