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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | MA_10432060g0010 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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| Family | bHLH | ||||||||
| Protein Properties | Length: 340aa MW: 39162.5 Da PI: 8.1111 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 26.8 | 9.1e-09 | 157 | 201 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
h ++Er+RR ++++ f+ L +llP + K +K ++L+ + +Y+++L
MA_10432060g0010 157 HMIAERNRRGKLKHHFSLLHSLLPYN-----SKRDKYSVLTNTFKYMSEL 201
7899********************98.....7***************998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 1.57E-13 | 152 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 12.303 | 152 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 9.79E-7 | 156 | 202 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 2.5E-10 | 156 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.7E-6 | 157 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 1.8E-6 | 158 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 340 aa Download sequence Send to blast |
MASSGSGLIQ PNGKNSTTGN INADSMSTMD EAHFELLPLY STAKTSWYCS YSEDMETFYP 60 FDRCNISNGH SHPQSLIVAN NIISAPQSSM LYRQSAFDSY LRPNTHSVYV KNGRENLMKR 120 CFKFLRKIEA QKLNQAANIQ EQHEFDVSLQ NKAAFHHMIA ERNRRGKLKH HFSLLHSLLP 180 YNSKRDKYSV LTNTFKYMSE LKLRVDDLEQ INRALEESLR INISKKEGST SFDLRLEENQ 240 ATLLYSSDEV VLEQSKEIPN HVDMRINVRI DPLSSPTSLM IVLLERLREL QLELVSVQSN 300 VQPFKLEVRL LITVIKGDLL ESSRWENVVQ VVRRTFSVNE |
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | BT119313 | 0.0 | BT119313.1 Picea glauca clone GQ04104_B13 mRNA sequence. | |||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP11631 | 3 | 7 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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