PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_10431882g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 199aa MW: 22503.2 Da PI: 9.341 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.8e-17 | 33 | 82 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++kG+r +k +g+Wv+eIr p++ + +++lg++ tae+Aa+a++aa +l+g MA_10431882g0010 33 QFKGIRMRK-WGKWVSEIRIPKS---KEKIWLGSYKTAEQAARAYDAAVYCLRG 82 58*****99.**********843...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.1E-30 | 33 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.351 | 33 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-20 | 33 | 92 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 33 | 92 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.21E-27 | 33 | 92 | No hit | No description |
Pfam | PF00847 | 1.1E-9 | 34 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-8 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-8 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
YFQSQHVAFA SPNMEKHDAH ALQDDDRRQK RGQFKGIRMR KWGKWVSEIR IPKSKEKIWL 60 GSYKTAEQAA RAYDAAVYCL RGSAAKLNFP DSVPGIPSAS SLSRQQIQHA ATKYALDEIP 120 STSPSLHNNE AKKKPASPSR SSWISETDLS RNSQQISKDL DLDMWESLFN GTDSLNLDKF 180 PSIDEALASE LIPPWQQQQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-17 | 32 | 90 | 13 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | D5ADJ9 | 4e-66 | D5ADJ9_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19210.1 | 2e-36 | ERF family protein |