PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10431811g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 351aa MW: 38634.1 Da PI: 5.5835 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35 | 2.5e-11 | 187 | 229 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er+RR r+N+++ +Lr+l+P +K++Ka+i+ A+ Y+++Lq MA_10431811g0010 187 SERKRRGRLNERLYTLRSLVPRI-----TKMDKASIVGDAISYVQDLQ 229 5*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.707 | 179 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-17 | 184 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-16 | 185 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.67E-13 | 186 | 233 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.8E-16 | 186 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-9 | 187 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034756 | Biological Process | regulation of iron ion transport | ||||
GO:0071281 | Biological Process | cellular response to iron ion | ||||
GO:0071369 | Biological Process | cellular response to ethylene stimulus | ||||
GO:0071732 | Biological Process | cellular response to nitric oxide | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MERESQRGVV DVMEQRAGGG GGGISTAYPN NSSYGHGIFD FNGLALMEAA AAAAGDHNGL 60 LFGTDLIAYG HLMICPQKPR LSSLHRDLFL FFTHGAAELL TRNEAPENLS AFPQAQVHNS 120 SFHSFGGLDA PCDPNGYGAT GTPVQGKVDT KFLDDYSSDE IDNLDEDDKS SKSSQYGRSS 180 ESKTLLSERK RRGRLNERLY TLRSLVPRIT KMDKASIVGD AISYVQDLQK QVKDIQAEIE 240 GLRSNLSGQN NSTPLDGGNS AVSDLDYEMQ LYEEGNTNHP LPLPNEPPTW QKLDLDVTKV 300 EDRTFHIRLY CKKNPGVLIR LMRALESIQL DFHNANLTSF DGHIIKTATV K |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT102736 | 0.0 | BT102736.1 Picea glauca clone GQ02013_D04 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D6R8W4 | 3e-46 | A0A0D6R8W4_ARACU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP557 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28160.1 | 3e-32 | FER-like regulator of iron uptake |