PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10431176g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 786aa    MW: 85853.5 Da    PI: 6.9006
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10431176g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.25.5e-17342391255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  MA_10431176g0010 342 RSKHSATEQRRRSKINDRFQMLRDLVPHS----DQKRDKASFLLEVIEYIQVLQ 391
                       889*************************9....9*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.4E-23337411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-18339409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.66340390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-14342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.84E-15342395No hitNo description
SMARTSM003531.1E-12346396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MALSPRANAT AGSPKEIVTL SVSQATVCPP SSLHPGPVRS SDLSYSAALN SSFGFPFQDF  60
RTQRIPPPNS HCMELPHPQL PFEGSKPPHD FLSLYGDSSS NRVEHRSSQA NSTHLKTQDF  120
LQPLERGGKN SNIKGLEVSS AEASAATPAS SVEHVLPGGI GTYTISHISG YSQINGKSEI  180
PVVHVNVAET KPEVTRAASS TNYGGGAFTL WEERIRAVDG NRTSDGLAAT DFSKEYLEKS  240
GYWPAVRAKT DLSFPAKTAF SLSTVETSQQ PLPSSSKQRL QTGQGFVEMI KSIKAISEDD  300
EDEEDEYVDR SRESRKECSS QKGDPPPKAD ARSNDQKANT PRSKHSATEQ RRRSKINDRF  360
QMLRDLVPHS DQKRDKASFL LEVIEYIQVL QEKVRKYETT EQSWNQERMK TMVWDLCKKS  420
PGHGEVPVDG SRIVVGTLSD SKQNNEVGDP ARSKVTPNAL HYENGTAGTD MHPTSQNLMQ  480
PNKSTPVIPG CAPSYKEKEN IGAFNKSIPP TLSMQQCVYS PFGRSYIHST HPKGQATSEI  540
HSLQSIQGIT PTCIPANAYN FDKEKDGDSA APVQLSHFQG NTVTVAKTTS GHESQRSELR  600
SSQLSPIQQY SSQNGGILLK DEAADTKSAS KSENQHSSAY FNSSPRSSQY VPQSEAELAS  660
RQPQPRSSSP DQHRASEPRL AASEQEELVI QSGVINVSSV YSQGLLDTLT QALQNSGLDL  720
SQANISVQID LGRRGGTSGA TTNTKEHSHN HEESSQNHQL QGQSRAADTS SECEQPQKRP  780
KIERDV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1125450.0BT112545.1 Picea glauca clone GQ03317_C05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020522638.11e-121transcription factor BIM2 isoform X2
TrEMBLW1P7A61e-104W1P7A6_AMBTC; Uncharacterized protein
STRINGERN057521e-105(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-57bHLH family protein