PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10430850g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 26391.1 Da PI: 4.5109 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.5 | 9.2e-15 | 27 | 75 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 kG+r +k +g+Wv+eIr p++ r + +lg++ ta++Aa+a++ a +l+g MA_10430850g0010 27 LKGIRLRK-WGSWVSEIRIPRS---REKLWLGSYPTAQQAARAYDVAVYCLRG 75 59***999.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.8E-26 | 26 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.376 | 26 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 27 | 38 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-17 | 27 | 85 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-26 | 27 | 84 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.81E-23 | 28 | 85 | No hit | No description |
Pfam | PF00847 | 7.1E-9 | 28 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-6 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEKPSPQEHD HAHALDDEDR GQKCRQLKGI RLRKWGSWVS EIRIPRSREK LWLGSYPTAQ 60 QAARAYDVAV YCLRGSAAKF NFPNSVPDIP SASSLSRREI QLAAAKYALD KLPSSPPSLQ 120 ENDENNNIKA SEEAASSSRX XXXENNNIKA SEEAASSSRS ASVSETELWS DSHQILEEPE 180 LDLRECGSDG NYGLALNLER MPSIDDALAL ELIPSTWQEE EHMDMFVDPT ELWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 26 | 84 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5ADJ9 | 2e-62 | D5ADJ9_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 8e-33 | ERF family protein |