PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10430397g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 157aa    MW: 18091.5 Da    PI: 8.0444
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10430397g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.95.8e-5561361129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       lppGfrFhPtdeel+++yLk k+++     + evi+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatg+d+
  MA_10430397g0010   6 LPPGFRFHPTDEELISCYLKGKLNHGLkAAELEVISEVDLYKLEPWDLPeKsFLPSTDMEWYFFSPRDRKYPNGSRTNRATEAGYWKATGRDR 98 
                       79********************987763555689**************95344556788********************************** PP

               NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +++s + +++g+kktLvfy+grap+ge+tdWvmheyrle
  MA_10430397g0010  99 KIYS-RASTIGIKKTLVFYRGRAPQGERTDWVMHEYRLE 136
                       ****.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-583141IPR003441NAC domain
PROSITE profilePS5100556.6326157IPR003441NAC domain
PfamPF023653.0E-297135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MGTFALPPGF RFHPTDEELI SCYLKGKLNH GLKAAELEVI SEVDLYKLEP WDLPEKSFLP  60
STDMEWYFFS PRDRKYPNGS RTNRATEAGY WKATGRDRKI YSRASTIGIK KTLVFYRGRA  120
PQGERTDWVM HEYRLEENES EAGPCLQVLG FSGNVKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-52613515140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6767650.0EF676765.1 Picea sitchensis clone WS02751_F10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020248886.12e-73NAC domain-containing protein 86-like isoform X1
RefseqXP_020248888.11e-74NAC domain-containing protein 86-like isoform X2
SwissprotQ9FFI54e-69NAC86_ARATH; NAC domain-containing protein 86
TrEMBLB8LLW81e-102B8LLW8_PICSI; Uncharacterized protein
STRINGXP_008813657.14e-72(Phoenix dactylifera)
STRINGMLOC_71128.15e-74(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-71NAC domain containing protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]