PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10430231g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 216aa MW: 24603.8 Da PI: 8.1005 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.5e-17 | 6 | 51 | 2 | 51 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaark 51 +y+GVr++ +g+Wv+eIr+p +r++lg+f tae+Aa a+++a+ MA_10430231g0010 6 RYRGVRQRQ-WGSWVSEIRHP-----LlkTRVWLGTFETAEDAAHAYDEAAV 51 69****999.**********8.....334*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.53E-29 | 5 | 66 | No hit | No description |
SMART | SM00380 | 1.5E-35 | 6 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.4E-10 | 6 | 51 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.837 | 6 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-18 | 6 | 65 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-31 | 6 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-11 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-11 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MAKPQRYRGV RQRQWGSWVS EIRHPLLKTR VWLGTFETAE DAAHAYDEAA VLMCGSDHAK 60 TNFTYDPNAP PSRKSSFLSA SLTAKLRQCY SASLNIEMQQ STANKRHPRP PVMTHFLTYL 120 RLDTEKSDLG IWRKRAGKQS ESKWVMTVKL GSGSDGDRRA PPKQEETKDV MEEETEDVIA 180 MEMIEELLHP TSVEFSSQTD PSHMCNGKNV MRAEFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-15 | 2 | 69 | 1 | 68 | ATERF1 |
3gcc_A | 5e-15 | 2 | 69 | 1 | 68 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT110788 | 1e-140 | BT110788.1 Picea glauca clone GQ03227_P10 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024393916.1 | 7e-65 | ethylene-responsive transcription factor ERF003-like | ||||
TrEMBL | A0A2K1JHW1 | 2e-63 | A0A2K1JHW1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S79_25V6.1 | 1e-63 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 8e-37 | ERF family protein |