PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10430013g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C2H2 | ||||||||
Protein Properties | Length: 617aa MW: 66129.6 Da PI: 8.6426 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.8e-05 | 73 | 95 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H MA_10430013g0020 73 FVCEICNKGFQRDQNLQLHRRGH 95 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.4 | 0.00047 | 149 | 171 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ MA_10430013g0020 149 WKCEKCSKKYAVQSDWKAHSKTC 171 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.76E-6 | 72 | 95 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-5 | 72 | 95 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 73 | 95 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 73 | 95 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 75 | 95 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 250 | 114 | 144 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.7E-4 | 137 | 170 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.76E-6 | 144 | 169 | No hit | No description |
SMART | SM00355 | 140 | 149 | 169 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 617 aa Download sequence Send to blast |
MSNLVSPSVE ASASSSNRAE GNTVQQQLVS NADPNSGVEP PAVKRKRNLP GNPDPDAEVI 60 ALSPKTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTSKEIR KRVYICPENT 120 CVHHDPTRAL GDLTGIKKHF CRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYRCDC 180 GTLFSRRDSF ITHRAFCDAL AEESARVTGG ITLGGHGQLL GVHSSDSLGQ RGAPLPLMGA 240 SSSHHLVKEL SQNLHSTISP RLGISESSEP ANTNAAGAIR PRLPLWLAAG SGTPGSHSQV 300 NTMDAAASEF VDAQSPKNML RVMPPPSKYD YSQGQKPSSG LLPLTSGTEW TDRGSAGLTS 360 SSSGNTNGNQ IDSLPSLPYL YGQHSNSSTG TAQMSATALL QKAAQMGATV SNSSLIRGCG 420 SDTTPFGLGL SWQGSSQDKQ REDQMSGMVS SFVQSHALFK GHLDPTAHSN SFTAGNTRFS 480 DNAALQQVIS SLSEGFLGSL YERDFNTIHQ STFGENIGTI RRSPQQSVVQ GTHPLISAAM 540 GNLNARTEDG SDGLTRDFLG VGGVNPMITA TTDGSCMVRP SLLNVCSGMD SYSNHRENLA 600 SIGTDVSQSP AKSWDAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-35 | 145 | 208 | 3 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 4e-35 | 145 | 208 | 3 | 66 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00125 | DAP | Transfer from AT1G03840 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024365599.1 | 1e-143 | protein indeterminate-domain 1-like isoform X1 | ||||
Swissprot | Q9ZWA6 | 1e-119 | IDD3_ARATH; Zinc finger protein MAGPIE | ||||
TrEMBL | A0A2K1L2D8 | 1e-142 | A0A2K1L2D8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S165_3V6.1 | 1e-141 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-106 | C2H2 family protein |
Publications ? help Back to Top | |||
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