PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10429939g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 272aa MW: 31622.8 Da PI: 6.9599 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.4 | 1.4e-12 | 15 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 r +WTt Ed +l d+++ +G + W++ + g++R++k+c++rw +yl MA_10429939g0010 15 RVAWTTKEDMILRDYINIHGLEgGWRSLRDKTGLNRSGKSCRLRWMNYL 63 679*****************8899***********************97 PP | |||||||
2 | Myb_DNA-binding | 47.7 | 3.7e-15 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +t+E+el+++++++lG++ W++Ia +++ g t +++k++w+++l MA_10429939g0010 69 RGNISTDEEELIIRLHRLLGNR-WSLIAGRLP-GQTNNEIKNYWNTHL 114 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.041 | 10 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.71E-24 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-9 | 14 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-11 | 15 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-19 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.66E-6 | 17 | 63 | No hit | No description |
PROSITE profile | PS51294 | 23.479 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-13 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-13 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-23 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.62E-8 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MGRSPRRSRD EGLNRVAWTT KEDMILRDYI NIHGLEGGWR SLRDKTGLNR SGKSCRLRWM 60 NYLRPNIKRG NISTDEEELI IRLHRLLGNR WSLIAGRLPG QTNNEIKNYW NTHLRKKIGT 120 LIKHDLNEAK MTEEDINIST GLDLVGANQI VVNIENNITD AQSFDEQLKT LLEEDSTMEK 180 CSRHHNNMTS LILEDEELFF KHNGITSEGV LVMDVKCDIK DLLNRDERQV RREERLESLL 240 RALQLNTPNI GILDKDIAQD QQKERMPDHS FG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-19 | 13 | 118 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT118942 | 0.0 | BT118942.1 Picea glauca clone GQ04012_C23 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008228205.1 | 1e-56 | PREDICTED: transcription factor TT2-like | ||||
TrEMBL | B8LMJ6 | 3e-58 | B8LMJ6_PICSI; Uncharacterized protein | ||||
STRING | XP_008228205.1 | 5e-56 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 2e-42 | myb domain protein 6 |