PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_10429891g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 417aa MW: 45534.8 Da PI: 7.9969 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 116.3 | 1.6e-36 | 4 | 88 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEE.......TTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhe.......lsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+++l+ ak+yhrrhkvCe hsk p+v+v+g+eqrfCqqCsr e lsefDe+krsCrrrLa+hn+rrrk+q+ MA_10429891g0010 4 RCQVEGCKTELTAAKDYHRRHKVCELHSKFPKVIVNGIEQRFCQQCSREAElsetsswLSEFDEGKRSCRRRLAGHNQRRRKPQP 88 6***********************************************8762222222578*********************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.3E-27 | 2 | 73 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 28.598 | 2 | 86 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.12E-34 | 3 | 90 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.7E-27 | 5 | 85 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 417 aa Download sequence Send to blast |
MVPRCQVEGC KTELTAAKDY HRRHKVCELH SKFPKVIVNG IEQRFCQQCS REAELSETSS 60 WLSEFDEGKR SCRRRLAGHN QRRRKPQPYS QAMKSARFAS AFYDDRRLSS ILMDRSPFMH 120 PRIASNSIPE SSIDFKLGGY GKGAWPRVKA EDQSSYNGQV SAGTLSRHNA ERLLFLLQSS 180 KTVPGGAINQ DIHQYRQSSG DHVGQALTLS SLGENLAGLD VISATHGLSG LSDSGCALSL 240 LSIQSGGSRA SGSASFDMTR RSDLTVDQLI LENQPLMAQP SLMQGVQHNF GLFAADKLLT 300 ICSQSSTNLA TGGFPATVVN SMDKQHQGES LVSNADGIGN FGGYTFGLPQ GSSFRGSQAA 360 SSQDIQGTID LMCRSSETQT NDSHDQPGMV HQGSRQFTDV QLLRSFESSI YDTHQLL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-25 | 5 | 85 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT105462 | 0.0 | BT105462.1 Picea glauca clone GQ02822_N05 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K0M756 | 0.0 | A0A0K0M756_PINTB; SPL1 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43270.3 | 8e-36 | squamosa promoter binding protein-like 2 |