PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10429682g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB_related | ||||||||
Protein Properties | Length: 312aa MW: 35064.3 Da PI: 7.75 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.4e-18 | 155 | 199 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eEde +++++ lG++ W++Iar+++ gRt++++k++w +y MA_10429682g0010 155 RGNFSEEEDEFIIKLHSSLGNK-WSLIARRLP-GRTDNDIKNYWKTY 199 89********************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.762 | 114 | 149 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-11 | 135 | 161 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.15E-22 | 136 | 208 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 29.086 | 150 | 204 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-17 | 154 | 202 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 155 | 199 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.59E-14 | 157 | 200 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-22 | 162 | 201 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MTRSPIPSPS LLATQQQHYP QLSTRPGAPN SGIPEPKNTE DSRFLSIRAL WMLTDRTAAS 60 KDEEHPDINL DLCISLPLHS TPAANKASSV DGTVDSKSYY DHGVCCQIGL QVNYGGFWES 120 RYSAVSHNEG CFRLLRCGKS CRLRWINYLR PDVKRGNFSE EEDEFIIKLH SSLGNKWSLI 180 ARRLPGRTDN DIKNYWKTYI KKKLLKRGLD HQFHRPLCSP HNSNTTRSSR PAPEHQIPAF 240 QSPRTPEIAD FFQYELSGCS PIEPAASKDE EHPDINLDLC ISLPLHSTPA ANKASSVDGT 300 VDSKSYYDHG VC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-20 | 136 | 204 | 40 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ469923 | 0.0 | FJ469923.1 Picea glauca R2R3-MYB transcription factor MYB17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010028718.1 | 3e-54 | PREDICTED: myb-related protein 308 | ||||
Swissprot | P20026 | 5e-48 | MYB1_HORVU; Myb-related protein Hv1 | ||||
Swissprot | Q9SZP1 | 5e-48 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | C0JTD6 | 1e-122 | C0JTD6_PICGL; R2R3-MYB transcription factor MYB17 | ||||
STRING | XP_010028718.1 | 1e-53 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-50 | myb domain protein 4 |