PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10429682g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 312aa    MW: 35064.3 Da    PI: 7.75
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10429682g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.4e-18155199147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++++eEde +++++  lG++ W++Iar+++ gRt++++k++w +y
  MA_10429682g0010 155 RGNFSEEEDEFIIKLHSSLGNK-WSLIARRLP-GRTDNDIKNYWKTY 199
                       89********************.*********.************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.762114149IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.2E-11135161IPR009057Homeodomain-like
SuperFamilySSF466894.15E-22136208IPR009057Homeodomain-like
PROSITE profilePS5129429.086150204IPR017930Myb domain
SMARTSM007171.2E-17154202IPR001005SANT/Myb domain
PfamPF002491.7E-16155199IPR001005SANT/Myb domain
CDDcd001677.59E-14157200No hitNo description
Gene3DG3DSA:1.10.10.602.6E-22162201IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MTRSPIPSPS LLATQQQHYP QLSTRPGAPN SGIPEPKNTE DSRFLSIRAL WMLTDRTAAS  60
KDEEHPDINL DLCISLPLHS TPAANKASSV DGTVDSKSYY DHGVCCQIGL QVNYGGFWES  120
RYSAVSHNEG CFRLLRCGKS CRLRWINYLR PDVKRGNFSE EEDEFIIKLH SSLGNKWSLI  180
ARRLPGRTDN DIKNYWKTYI KKKLLKRGLD HQFHRPLCSP HNSNTTRSSR PAPEHQIPAF  240
QSPRTPEIAD FFQYELSGCS PIEPAASKDE EHPDINLDLC ISLPLHSTPA ANKASSVDGT  300
VDSKSYYDHG VC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2013620440108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4699230.0FJ469923.1 Picea glauca R2R3-MYB transcription factor MYB17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028718.13e-54PREDICTED: myb-related protein 308
SwissprotP200265e-48MYB1_HORVU; Myb-related protein Hv1
SwissprotQ9SZP15e-48MYB4_ARATH; Transcription repressor MYB4
TrEMBLC0JTD61e-122C0JTD6_PICGL; R2R3-MYB transcription factor MYB17
STRINGXP_010028718.11e-53(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-50myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]