PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10428446g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

TALE

Protein Properties

Length: 440aa MW: 48674.8 Da PI: 6.0315

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10428446g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29	1.8e-09	369	401	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yps++++ LA+++gL+++q+ +WF N+R ++ MA_10428446g0010 369 PYPSESQKIALAESTGLDQKQINNWFINQRKRH 401 8*****************************885 PP
2	ELK	40.4	6e-14	321	342	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+qLlrKYsgyL+sLkqEF+ MA_10428446g0010 321 ELKDQLLRKYSGYLSSLKQEFL 342 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	2.1E-18	177	221	IPR005540	KNOX1
Pfam	PF03790	1.7E-21	178	220	IPR005540	KNOX1
SMART	SM01256	3.4E-24	226	277	IPR005541	KNOX2
Pfam	PF03791	4.4E-23	229	276	IPR005541	KNOX2
PROSITE profile	PS51213	11.592	321	341	IPR005539	ELK domain
Pfam	PF03789	7.2E-11	321	342	IPR005539	ELK domain
SMART	SM01188	7.1E-8	321	342	IPR005539	ELK domain
PROSITE profile	PS50071	12.6	341	404	IPR001356	Homeobox domain
SMART	SM00389	4.4E-13	343	408	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-19	343	417	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.4E-27	346	406	IPR009057	Homeodomain-like
CDD	cd00086	2.55E-12	353	405	No hit	No description
Pfam	PF05920	1.7E-16	361	400	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	379	402	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001708	Biological Process	cell fate specification
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010089	Biological Process	xylem development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MMALMTEHQP ESESIMTSIP IPSSYSSYSH GHGHGHGHGH GHGQSECLLS AAAMFQSSRP 60 CQGANKFEPA NAHIGGGGAG HFVMEQFIPE QAVISDSSIS SVKTEVCSGS GGTGVPGQFE 120 LIRRKEEGRC ARAYAEPSFV VTPLVTSLPP QQQEARMVTS LAVDMDSSCS CKPIEADAMK 180 AKIIAHVHYP RLVAAYIDCQ KVGAPPDVVS ELDELSQKCH AQQCVATISI GADPELDQFM 240 EAYCEMFIKY QEELTKPFKE AMAFLKKIEN QLGALTKGTI RTSSLDQGDE RGDGAASSEE 300 EDGSGGEVEF HEVDPHAEDR ELKDQLLRKY SGYLSSLKQE FLKKKKKGKL PKEARQKLLD 360 WWTRNYKWPY PSESQKIALA ESTGLDQKQI NNWFINQRKR HWKPSEEMQF VVMDSPNPHN 420 AAFFLEGHLR TDGTAFSMDC

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MMALMTEHQP ESESIMTSIP IPSSYSSYSH GHGHGHGHGH GHGQSECLLS AAAMFQSSRP  60
CQGANKFEPA NAHIGGGGAG HFVMEQFIPE QAVISDSSIS SVKTEVCSGS GGTGVPGQFE  120
LIRRKEEGRC ARAYAEPSFV VTPLVTSLPP QQQEARMVTS LAVDMDSSCS CKPIEADAMK  180
AKIIAHVHYP RLVAAYIDCQ KVGAPPDVVS ELDELSQKCH AQQCVATISI GADPELDQFM  240
EAYCEMFIKY QEELTKPFKE AMAFLKKIEN QLGALTKGTI RTSSLDQGDE RGDGAASSEE  300
EDGSGGEVEF HEVDPHAEDR ELKDQLLRKY SGYLSSLKQE FLKKKKKGKL PKEARQKLLD  360
WWTRNYKWPY PSESQKIALA ESTGLDQKQI NNWFINQRKR HWKPSEEMQF VVMDSPNPHN  420
AAFFLEGHLR TDGTAFSMDC

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state, and its expression disappears at the same time the shoot apex undergoes the transition from vegetative to reproductive development (PubMed:11934861). Positive regulator of LATERAL ORGAN BOUNDARIES (LOB) (PubMed:11934861). Probably binds to the DNA sequence 5'-TGAC-3' (PubMed:11934861). Able to traffic from the L1 to the L2/L3 layers of the meristem, presumably through plasmodesmata (PubMed:12900451). {ECO:0000269\|PubMed:11934861, ECO:0000269\|PubMed:12900451, ECO:0000269\|PubMed:7866029}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00675	ChIP-seq	Transfer from GRMZM2G017087	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by ASYMMETRIC LEAVES1 (AS1) and ASYMMETRIC LEAVES2 (AS2).

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF483277	0.0	AF483277.1 Picea abies KNOTTED1-like homeodomain protein 2 (HBK2) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022870905.1	1e-108	homeotic protein knotted-1 isoform X1
Swissprot	P46639	1e-108	KNAT1_ARATH; Homeobox protein knotted-1-like 1
TrEMBL	Q8GZN0	0.0	Q8GZN0_PICAB; KNOTTED1-like homeodomain protein 2 (Fragment)
STRING	Cagra.7524s0001.1.p	1e-107	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP167	17	148

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08150.1	1e-98	KNOTTED-like from Arabidopsis thaliana

Publications ? help Back to Top
dela Paz JS, et al. Chromosome fragile sites in Arabidopsis harbor matrix attachment regions that may be associated with ancestral chromosome rearrangement events. PLoS Genet., 2012. 8(12): p. e1003136 [PMID:23284301] Liu C, et al. Phosphatidylserine synthase 1 is required for inflorescence meristem and organ development in Arabidopsis. J Integr Plant Biol, 2013. 55(8): p. 682-95 [PMID:23931744] Liu B, et al. NEVERSHED and INFLORESCENCE DEFICIENT IN ABSCISSION are differentially required for cell expansion and cell separation during floral organ abscission in Arabidopsis thaliana. J. Exp. Bot., 2013. 64(17): p. 5345-57 [PMID:23963677] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368] Scofield S,Dewitte W,Murray JA STM sustains stem cell function in the Arabidopsis shoot apical meristem and controls KNOX gene expression independently of the transcriptional repressor AS1. Plant Signal Behav, 2018. [PMID:24776954] Lee JE,Lampugnani ER,Bacic A,Golz JF SEUSS and SEUSS-LIKE 2 coordinate auxin distribution and KNOXI activity during embryogenesis. Plant J., 2014. 80(1): p. 122-35 [PMID:25060324] Rast-Somssich MI, et al. Alternate wiring of a KNOXI genetic network underlies differences in leaf development of A. thaliana and C. hirsuta. Genes Dev., 2015. 29(22): p. 2391-404 [PMID:26588991] Duplat-Bermúdez L,Ruiz-Medrano R,Landsman D,Mariño-Ramírez L,Xoconostle-Cázares B Transcriptomic analysis of Arabidopsis overexpressing flowering locus T driven by a meristem-specific promoter that induces early flowering. Gene, 2016. 587(2): p. 120-31 [PMID:27154816] Li Z, et al. Transcription factors AS1 and AS2 interact with LHP1 to repress KNOX genes in Arabidopsis. J Integr Plant Biol, 2016. 58(12): p. 959-970 [PMID:27273574] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] Frangedakis E,Saint-Marcoux D,Moody LA,Rabbinowitsch E,Langdale JA Nonreciprocal complementation of KNOX gene function in land plants. New Phytol., 2017. 216(2): p. 591-604 [PMID:27886385] Woerlen N, et al. Repression of BLADE-ON-PETIOLE genes by KNOX homeodomain protein BREVIPEDICELLUS is essential for differentiation of secondary xylem in Arabidopsis root. Planta, 2017. 245(6): p. 1079-1090 [PMID:28204875] Douglas SJ,Li B,Kliebenstein DJ,Nambara E,Riggs CD A novel Filamentous Flower mutant suppresses brevipedicellus developmental defects and modulates glucosinolate and auxin levels. PLoS ONE, 2017. 12(5): p. e0177045 [PMID:28493925] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Simonini S,Stephenson P,Østergaard L A molecular framework controlling style morphology in Brassicaceae. Development, 2018. [PMID:29440299] Felipo-Benavent A, et al. Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction. Development, 2019. [PMID:30389856]