PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10428436g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C2H2 | ||||||||
Protein Properties | Length: 402aa MW: 43923.8 Da PI: 5.0698 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.0003 | 86 | 108 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ Fs+ L Hir H MA_10428436g0020 86 HVCRHCNRAFSSGRALGGHIRIH 108 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.42E-6 | 84 | 108 | No hit | No description |
Pfam | PF13912 | 3.7E-5 | 85 | 104 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.034 | 86 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 88 | 108 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.42E-6 | 338 | 358 | No hit | No description |
Pfam | PF13912 | 0.0013 | 343 | 359 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MGHSLESPKP EGIDNDIKNK NSSGSSSPSP SPTGMMEIVR SKTNRKKSRV TRSQINDFHA 60 NANPLIADDE DEDEGAANPG RRNRYHVCRH CNRAFSSGRA LGGHIRIHGA SFKGARAAVA 120 AIATDSSNNS SSKSLFKGAE VDGSEDEDED EEEEEDSSAS SHHEQELSNG CSPKMVSLYT 180 LRNNPKRSSI LMDPEFTLEL MGSSGAKRNC WQESNSGVFP YSESGSEHKG LVAPQFGSWS 240 VTRNRSSREP KRQRQRQRHA QGEGEGEAEG EGEGEGSLMM ESEAAANTTG MNGIWPPPRE 300 EEGGGGTVTV TMTMSHLTQE ESPEQQQQQQ QQESFSQKLG RPHQCSICQR VFLSGQALET 360 ATSVISKQES GCRVRNWRGE ELLDLNQPPP VDEDGLRAAF DM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 250 | 255 | KRQRQR |