PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10428436g0020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 402aa    MW: 43923.8 Da    PI: 5.0698
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10428436g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000386108123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C +C++ Fs+   L  Hir H
  MA_10428436g0020  86 HVCRHCNRAFSSGRALGGHIRIH 108
                       79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.42E-684108No hitNo description
PfamPF139123.7E-585104IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.03486108IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
SuperFamilySSF576677.42E-6338358No hitNo description
PfamPF139120.0013343359IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGHSLESPKP EGIDNDIKNK NSSGSSSPSP SPTGMMEIVR SKTNRKKSRV TRSQINDFHA  60
NANPLIADDE DEDEGAANPG RRNRYHVCRH CNRAFSSGRA LGGHIRIHGA SFKGARAAVA  120
AIATDSSNNS SSKSLFKGAE VDGSEDEDED EEEEEDSSAS SHHEQELSNG CSPKMVSLYT  180
LRNNPKRSSI LMDPEFTLEL MGSSGAKRNC WQESNSGVFP YSESGSEHKG LVAPQFGSWS  240
VTRNRSSREP KRQRQRQRHA QGEGEGEAEG EGEGEGSLMM ESEAAANTTG MNGIWPPPRE  300
EEGGGGTVTV TMTMSHLTQE ESPEQQQQQQ QQESFSQKLG RPHQCSICQR VFLSGQALET  360
ATSVISKQES GCRVRNWRGE ELLDLNQPPP VDEDGLRAAF DM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250255KRQRQR