PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10428170g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 342aa    MW: 38101.3 Da    PI: 9.5137
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10428170g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30272329359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++p+++++tYegeHnh+
  MA_10428170g0010 272 DDHSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCLDEPSMLIVTYEGEHNHS 329
                       99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.0E-17223268IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-32258329IPR003657WRKY domain
PROSITE profilePS5081129.057265331IPR003657WRKY domain
SuperFamilySSF1182901.31E-26268329IPR003657WRKY domain
SMARTSM007742.2E-37270330IPR003657WRKY domain
PfamPF031068.4E-27272328IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MENSDKFLSS TLEVNLSIQE AVRSGLQSAY QVLNILTKQN QQCPFEKIQH DFSGATEEAL  60
SKFRKTVSLL GRTDHGRIRK SPVLPVSGNG EAFIDTFHFI SPHNSNLVPH HASSALLYMP  120
PPAPSDLAIL QKLRQLFLPT NVNNPQLAGH QAQHIFREAD LMLRDNFMKF ENSINCTGNL  180
HQSCTKSFVS SVNTESNVGE DRHMTLQYPL AVSNEVTPAF YFKRKCSGKG DESGGKCASS  240
GGCRCSKRRK LRIKRTIKVP ATSSKLADIP PDDHSWRKYG QKPIKGSPYP RGYYKCSSMR  300
GCPARKHVER CLDEPSMLIV TYEGEHNHSR ILSGGPSLVL DT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-20258328271WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6762120.0EF676212.1 Picea sitchensis clone WS0271_E10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LKE90.0B8LKE9_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-54WRKY DNA-binding protein 21