PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10428163g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family RAV
Protein Properties Length: 439aa    MW: 48596.6 Da    PI: 8.3089
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10428163g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75.2e-12139187155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      ++r++lg+f ++e Aa+ +++a+ k++g
  MA_10428163g0010 139 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNSEEVAARTYDKAAIKFRG 187
                       78****9888.8*********3.....5*************************98 PP
2B393.71.3e-29294390186
                       EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                       f k+ tpsdv+k++r+v+pk+fae++           g+ k++++ l +ed++ ++W+++++++++s++yvlt+GW++Fvk+++L++gD+v+F
  MA_10428163g0010 294 FNKTVTPSDVGKLNRIVIPKQFAEKYfsldvdvdgesGECKRNGVLLNFEDSTYKTWRFRYSFWNSSQSYVLTRGWNRFVKEKRLQAGDIVTF 386
                       899******************************99997778899************************************************* PP

                       EE-S CS
                B3  83 kldg 86 
                       +++ 
  MA_10428163g0010 387 ERSC 390
                       *543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.3E-15139193IPR016177DNA-binding domain
CDDcd000183.69E-24139193No hitNo description
SMARTSM003801.8E-25140201IPR001471AP2/ERF domain
PfamPF008472.1E-7140187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-18140193IPR001471AP2/ERF domain
PROSITE profilePS5103219.335140195IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.4E-37286413IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-29289410IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-25292393No hitNo description
PfamPF023621.0E-26294389IPR003340B3 DNA binding domain
SMARTSM010194.8E-17294405IPR003340B3 DNA binding domain
PROSITE profilePS5086313.676294406IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MVCVDCGIDS VSVYVLQASG NGNCATTPDV ALSLGRCLST SDADNSSYSG GVRNYSIAFK  60
ELGADSTTID NNESGSVTED DDPKSSPAVA GKSFCSNFSF ADGVGLERTG SGISVLSAEN  120
NQTPSAQGKE KSCKKLPSSQ YKGVVPQPNG RWGAQIYEKH QRVWLGTFNS EEVAARTYDK  180
AAIKFRGPDA ITNSNLVDSH QEAVFLGRHS KSEIVDMLRK HTYDEELKQN KTTSDINLDF  240
VGSXXXXXXX XXXXXXXXXX XXXXXKQNKT TSDINLDFVG STFPETPEPR EHLFNKTVTP  300
SDVGKLNRIV IPKQFAEKYF SLDVDVDGES GECKRNGVLL NFEDSTYKTW RFRYSFWNSS  360
QSYVLTRGWN RFVKEKRLQA GDIVTFERSC ATSISHKHFI SFSRRRCRRP FPTNTLSLSA  420
AAAAAASAMS SLQPPRRRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-402904054113B3 domain-containing transcription factor NGA1
5os9_B1e-402904054113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592563.11e-92AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotP822802e-88RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
STRINGcassava4.1_010157m4e-92(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-89related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]