PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10427835g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family BBR-BPC
Protein Properties Length: 352aa    MW: 39262.5 Da    PI: 9.5049
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10427835g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind42.62.2e-13175176
         GAGA_bind  1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalve 76
                      mdddg  + r++   e++  +k++ gl+ ms++aerda+i ern+a+sekk a+ae++ a  qrd a a+rn a++e
  MA_10427835g0010  1 MDDDGRLDiRHWDTLEQS--VKDHPGLKFMSVLAERDAAILERNTAFSEKKVAFAEKETAIFQRDVAYADRNTAILE 75
                      9************98887..****************************************************99876 PP
2GAGA_bind313.47.3e-966735233301
         GAGA_bind  33 aerdaki....rernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.salpvgvqvlsgtksidslqqlsepqle 120
                       a+r+++i     ern+a+sekkaa+ae++ a  qrd a a+rn a++erd +++al +++++    + + ++++ls++k ++ l +  +p ++
  MA_10427835g0010  67 ADRNTAIlepiLERNTAFSEKKAAFAEKETAIFQRDVAYADRNTAILERDAAAAALDYARDGGWnGQRSLSCGTLSNAKILQVLAE--NPTFS 157
                       5899998888899*********************************************9998764567789999*99999998877..77787 PP

         GAGA_bind 121 dsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader.............skaekksidlvln 199
                          ++ +r  +     p+ ea++ ++ +k+ k+++++k+  ++  +k k  ++++k+  +k++ +++             +k+e+k++d+v+n
  MA_10427835g0010 158 AREYQtMRPINVAYPAPVLEAPPYEEPQKTAKRTSKKKDGEKESPSKRKSDGSEPKSLRQKKQRKPSvtteeglngevtvVKKEQKNLDVVIN 250
                       77777678888888888888888777777777666666655555555555455444433333333335667899999999************* PP

         GAGA_bind 200 gvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkH 292
                       g+ +D+s++P+PvC+CtG+ +qCY+WGnGGWqSaCCtt+iS+yPLP++++rrgaR+agrKmS+gaf+klLe+L aeGy+l+ p+DLk++WAkH
  MA_10427835g0010 251 GIVFDISAMPIPVCTCTGVAQQCYRWGNGGWQSACCTTSISMYPLPMNPNRRGARVAGRKMSGGAFRKLLERLGAEGYNLNYPIDLKSYWAKH 343
                       ********************************************************************************************* PP

         GAGA_bind 293 Gtnkfvtir 301
                       Gtnkfvtir
  MA_10427835g0010 344 GTNKFVTIR 352
                       ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.2E-981352IPR010409GAGA-binding transcriptional activator
SMARTSM012261.0E-1171352IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDDDGRLDIR HWDTLEQSVK DHPGLKFMSV LAERDAAILE RNTAFSEKKV AFAEKETAIF  60
QRDVAYADRN TAILEPILER NTAFSEKKAA FAEKETAIFQ RDVAYADRNT AILERDAAAA  120
ALDYARDGGW NGQRSLSCGT LSNAKILQVL AENPTFSARE YQTMRPINVA YPAPVLEAPP  180
YEEPQKTAKR TSKKKDGEKE SPSKRKSDGS EPKSLRQKKQ RKPSVTTEEG LNGEVTVVKK  240
EQKNLDVVIN GIVFDISAMP IPVCTCTGVA QQCYRWGNGG WQSACCTTSI SMYPLPMNPN  300
RRGARVAGRK MSGGAFRKLL ERLGAEGYNL NYPIDLKSYW AKHGTNKFVT IR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9822810.0FJ982281.1 Picea sitchensis GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLH1ZN640.0H1ZN64_PICSI; GAGA-binding transcriptional activator
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28411331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.14e-65basic pentacysteine 6