PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10427612g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HB-other

Protein Properties

Length: 268aa MW: 29962.6 Da PI: 9.8702

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10427612g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.9	7e-08	144	184	13	53
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 e +F +nr ps++ +e LAk+ +++ +qV WF N R MA_10427612g0010 144 EKFRVVFGENRFPSRSLKEGLAKEFDISFKQVHKWFDNARH 184 56667899******************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.8E-8	112	183	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-8	127	187	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.807	129	189	IPR001356	Homeobox domain
SMART	SM00389	2.8E-4	131	193	IPR001356	Homeobox domain
CDD	cd00086	3.87E-6	131	183	No hit	No description
Pfam	PF00046	1.6E-5	144	184	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MFGLAASDED SMSEDDEEWG PRKQLRKGKQ FDVEQDASSV SKLMQLNKDS VMKKKGKGPD 60 VNSSEDINLS KLNLCRKDDA EKVNEECKIS KKAKHREGVP EEDVAPSEFK ASTKENTNQQ 120 EQLGSPPVSA KKKVFSRLPT PAIEKFRVVF GENRFPSRSL KEGLAKEFDI SFKQVHKWFD 180 NARHFARHQD GRKQVDNFDG SNESTSIIKD DNITSEKVKV PDSAGKRNKD TKIVPSAERG 240 KRKGGEKHGI KDLKSPTSSG KELAGNIT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT118955	0.0	BT118955.1 Picea glauca clone GQ04012_G02 mRNA sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1830	15	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	1e-10	pathogenesis related homeodomain protein A