PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10427484g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HD-ZIP

Protein Properties

Length: 806aa MW: 87705.9 Da PI: 5.7831

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10427484g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.6	5.1e-09	19	56	24	57
S--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 24 ypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 y+ ++ ++L +++ +++ +q+kvWFqNrR +ek+ MA_10427484g0010 19 YVRYTAEQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 56 556666678888888888******************97 PP
2	START	164.5	7.5e-52	126	334	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ W +++ +++g++ + +++ s++++g a+ra+ +v +++ v+e+l+d+ W ++++++++l + s+g g+++ MA_10427484g0010 126 IAEETLTEFLSKAKGNAVEWIQMPGMKPGPDAIGIVTISHGCTGVAARACSLVGIDPT-KVAEILKDRTSWLRDCRSVDVLTAFSTGngGTIE 217 789*****************************************************.8888888888******************** PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l +++++a+++l++ Rdf+++Ry+ l++g++v++++S++ +q p+ +++vRae+ pSg+li+p+++g+s +++v+h+dl+ ++++++l MA_10427484g0010 218 LLYMQMYAPTTLASaRDFWTLRYTSVLEDGSLVVCERSLSGTQGGPSmpaVQHFVRAEMQPSGYLIRPCEGGGSLIHIVDHMDLEPWSVPEVL 310 ******************************************999899************************************* PP HHHHHHHHHHHHHHHHHHTXXXXX CS START 182 rslvksglaegaktwvatlqrqce 205 r+l++s+++ ++k ++a+l+++++ MA_10427484g0010 311 RPLYESSTVLAQKVTMAALRHLRQ 334 *****************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.349	8	57	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-6	19	56	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-7	22	61	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-7	24	56	IPR009057	Homeodomain-like
CDD	cd00086	1.36E-5	26	58	No hit	No description
PROSITE profile	PS50848	25.633	116	344	IPR002913	START domain
CDD	cd08875	1.21E-81	120	336	No hit	No description
SuperFamily	SSF55961	4.4E-37	125	337	No hit	No description
SMART	SM00234	6.1E-37	125	335	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	7.8E-24	125	331	IPR023393	START-like domain
Pfam	PF01852	1.6E-49	126	334	IPR002913	START domain
SuperFamily	SSF55961	4.4E-5	365	456	No hit	No description
SuperFamily	SSF55961	4.4E-5	488	568	No hit	No description
Pfam	PF08670	6.1E-41	662	784	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 806 aa Download sequence Send to blast
MAVTSSKEGK FSGMDQGKYV RYTAEQQLIR ECPILSNIEP KQIKVWFQNR RCREKQRKEA 60 SRLQAKQVSQ LVYENGYFRQ QLQNASIATT DTSCESVVTS VKHQQQNHLT PRDPPRDASP 120 AGLLSIAEET LTEFLSKAKG NAVEWIQMPG MKPGPDAIGI VTISHGCTGV AARACSLVGI 180 DPTKVAEILK DRTSWLRDCR SVDVLTAFST GNGGTIELLY MQMYAPTTLA SARDFWTLRY 240 TSVLEDGSLV VCERSLSGTQ GGPSMPAVQH FVRAEMQPSG YLIRPCEGGG SLIHIVDHMD 300 LEPWSVPEVL RPLYESSTVL AQKVTMAALR HLRQIAQEVS SDVVLGWGRQ PAALRTFSQR 360 LCKGFNEAVN GFTDDGWSLM GNDGMDDVTI LINSSPSKLL GQQFASSDGL PALGGGILCA 420 KASMLLQNVP PALLVRFLRE HRSEWADSNI DAYSAASWKA SPCTVPSSRI GGFGGGGQVI 480 LPLAHTVEHE EFLEVIKLEN NGLTQEEALL SRDMFLLQLC SGIDENAVGA CAELVFAPID 540 ASLADSSPLL PSGFRVIPLD SGMDGSSPNR TLDLASALEI GSAGTRTSVD YGGNSSNLRS 600 VLTIAFQFTF ENHLRENVAS MARQYVRGVV ASVQRVAMAL APSRLGSHLG PRLPPGTPEA 660 LTLARWVCQS YRFHLGVELL RPNSEVNESV LKILWHHSDA IMCCSLKSLP IFTFANQAGL 720 DMLETTLVAL QDISLEKILD DNGRKSFCSD IAQIMQQGYA YLPAGVCVSS MGRPASYDRA 780 IAWKYSVWVE VADQLGVEEI GNENVG

Sequence ? help Back to Top

Protein Sequence Length: 806 aa Download sequence Send to blast

MAVTSSKEGK FSGMDQGKYV RYTAEQQLIR ECPILSNIEP KQIKVWFQNR RCREKQRKEA  60
SRLQAKQVSQ LVYENGYFRQ QLQNASIATT DTSCESVVTS VKHQQQNHLT PRDPPRDASP  120
AGLLSIAEET LTEFLSKAKG NAVEWIQMPG MKPGPDAIGI VTISHGCTGV AARACSLVGI  180
DPTKVAEILK DRTSWLRDCR SVDVLTAFST GNGGTIELLY MQMYAPTTLA SARDFWTLRY  240
TSVLEDGSLV VCERSLSGTQ GGPSMPAVQH FVRAEMQPSG YLIRPCEGGG SLIHIVDHMD  300
LEPWSVPEVL RPLYESSTVL AQKVTMAALR HLRQIAQEVS SDVVLGWGRQ PAALRTFSQR  360
LCKGFNEAVN GFTDDGWSLM GNDGMDDVTI LINSSPSKLL GQQFASSDGL PALGGGILCA  420
KASMLLQNVP PALLVRFLRE HRSEWADSNI DAYSAASWKA SPCTVPSSRI GGFGGGGQVI  480
LPLAHTVEHE EFLEVIKLEN NGLTQEEALL SRDMFLLQLC SGIDENAVGA CAELVFAPID  540
ASLADSSPLL PSGFRVIPLD SGMDGSSPNR TLDLASALEI GSAGTRTSVD YGGNSSNLRS  600
VLTIAFQFTF ENHLRENVAS MARQYVRGVV ASVQRVAMAL APSRLGSHLG PRLPPGTPEA  660
LTLARWVCQS YRFHLGVELL RPNSEVNESV LKILWHHSDA IMCCSLKSLP IFTFANQAGL  720
DMLETTLVAL QDISLEKILD DNGRKSFCSD IAQIMQQGYA YLPAGVCVSS MGRPASYDRA  780
IAWKYSVWVE VADQLGVEEI GNENVG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ391916	0.0	HQ391916.1 Picea glauca class III homeodomain leucine zipper protein (HB5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006853643.2	0.0	homeobox-leucine zipper protein ATHB-15
Refseq	XP_020528699.1	0.0	homeobox-leucine zipper protein ATHB-15
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	E7DX26	0.0	E7DX26_PICGL; Class III homeodomain leucine zipper protein
STRING	ERN15110	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP651	16	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]