PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10427464g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | SBP | ||||||||
Protein Properties | Length: 388aa MW: 42301.9 Da PI: 9.7676 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 28.7 | 3.4e-09 | 173 | 218 | 1 | 46 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTT CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqC 46 +Cqv++C++dl++ak+yhrrhk + k p+ + l + f MA_10427464g0020 173 MCQVDDCRTDLTSAKDYHRRHKYVKPIPKLPKHSLGALCNAFVSSA 218 6*********************999988888877777766666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.2E-9 | 166 | 197 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 10.366 | 171 | 248 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.29E-9 | 172 | 220 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MGCADCDDRF PLRTGQGLCR TVANRKFRRA ELGLLKMDGK AGPQVASPFX XYEPPLAAKR 60 CVEPADSAWT RTNWQHQQQQ KNPPVYEVSK PNWNANLWDW DSGRFVAKPL PDQKRKLDEP 120 VKIFLPGKDS SENDPGNLTL KLGGSSYSYA DDTNASRQNK RVRSGSPGSS YPMCQVDDCR 180 TDLTSAKDYH RRHKYVKPIP KLPKHSLGAL CNAFVSSAAD FIRFKNLMRG REAVDGDSRG 240 TIGEGGKPSQ MKHCPGDXNN NSMEKPSGQS SLDGDQVIQL LNRMNSAFPS SQKVAAPSQG 300 FDLNIAQSIR SPRADIPKAN GNPSAGLTAE LLAIFSALTG PSHDALALLR NSLATNLNAN 360 LKPQHQTLPP PAPAPAPAAA QKPQERDI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0C9S2R6 | 4e-86 | A0A0C9S2R6_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_18703_5262 transcribed RNA sequence |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 1e-25 | squamosa promoter binding protein-like 14 |