PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10426648g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 580aa    MW: 62713.3 Da    PI: 7.3793
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10426648g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.31.5e-33212269260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ d++v+ei+Y+geHnh+k
  MA_10426648g0010 212 ADGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-DGQVTEIVYKGEHNHPK 269
                       6****************************************.***************85 PP
2WRKY104.94.2e-33401459159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct  gCpv+k+ver+++d k+v++tYeg+Hnh+
  MA_10426648g0010 401 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNLGCPVRKHVERASTDAKAVITTYEGKHNHD 459
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-30207270IPR003657WRKY domain
SuperFamilySSF1182903.66E-26210270IPR003657WRKY domain
SMARTSM007745.4E-38211269IPR003657WRKY domain
PfamPF031061.4E-26213268IPR003657WRKY domain
PROSITE profilePS5081124.627213270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-37386461IPR003657WRKY domain
SuperFamilySSF1182903.66E-29393461IPR003657WRKY domain
PROSITE profilePS5081138.17396461IPR003657WRKY domain
SMARTSM007741.5E-39401460IPR003657WRKY domain
PfamPF031064.9E-26402459IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
SLFLDEVTTT PYVQRSDASP SGDTQFSDET FCFDAWLLDD DDDPTYLLFP SLPKWAVATL  60
IDAVDFLTGG GVKIMVIVHL RPFADPLFEG HFEISHQQVL AQIQAQAAQA HAQAQSQPQA  120
KAQAQVQLQN HAASGHPPES SLTSSLSLQP TSSCMMPPTV GAGAASSNAI PPQKDIESPS  180
EAKQAIGISS KESNKRSPAS VPPVSVVGKP SADGYNWRKY GQKQVKGSEY PRSYYKCTHP  240
NCPVKKKVER SHDGQVTEIV YKGEHNHPKP HPTRRMSIVS HQYLSEGGQE VAHSVGGDLN  300
VRPNGSNSGF SGDPNVRNGR NADGSDPSTS MKIHDTGNRS PERSSGSSDD PRGADEGYDD  360
EPDSKRSRKD TKSKEVLVVA PLRTIREPRV VVQTRSDVDI LDDGYRWRKY GQKVVKGNPH  420
PRSYYKCTNL GCPVRKHVER ASTDAKAVIT TYEGKHNHDV PAARHSSHDV AGSVSHVQTI  480
NPSVVTNVLT SQQIGNKQSA FSRISESTSE GRNDANKSGE PVLAICDKSH SENMKTTVSS  540
STSVPLLTYT STGGSFGGGV NVSLSETVQV SGTIRPKEEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37213462878Probable WRKY transcription factor 4
2lex_A5e-37213462878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2697630.0EU269763.1 Pinus monticola WRKY transcription factor PmWRKY115 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6IEQ71e-96WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A0C9S7W80.0A0A0C9S7W8_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_12653_2863 transcribed RNA sequence
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.14e-81WRKY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]