PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_10426489g0020

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

GRAS

Protein Properties

Length: 664aa MW: 73898.9 Da PI: 5.0251

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_10426489g0020	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	433	2.3e-132	293	664	2	374
GRAS 2 velLlecAeavssgdle..laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 +elL++cA++v+++d+ ++++l+a++++ +s +gdpmqRl ay++e+L arla+s+ +ykal+++e + s e l+++++++ev+P++k MA_10426489g0020 293 KELLIACAKVVADSDNDsfKIDKLIAEIRQVVSISGDPMQRLGAYMVEGLVARLASSGGIIYKALRCKEPT---SPELLSYMQVLYEVCPYFK 382 689******997766569**********************************************9...9************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 f++++aN aI ea++ e+rvHiiDf+i+ G QW++L+qaLa+Rp+gpp++ iTg+++p s+ + le +g+rL+k+Ae+++vpfef++ v MA_10426489g0020 383 FGYMAANGAIAEAFKDEDRVHIIDFQIGLGSQWVTLIQALAARPRGPPRVCITGIDDPLSNyaRGGGLELVGKRLSKLAETCNVPFEFHP-VP 474 *****************************************************999888999********************.68 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 +d+++++L+++ g alaVn+++qlh+++desv+++++rd+++++ k+l Pkv+++veqe+++n+++F+ rf+e+l+yy+a+f+sl+++lp MA_10426489g0020 475 VMGADVQVNMLKCQAGHALAVNFSFQLHHMPDESVNTSNHRDRIIRIAKGLAPKVLTLVEQESNTNTAPFFPRFMETLSYYTAVFESLDVTLP 567 899************************************************************************************** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 res+eri+vE+++l+r+ivn++acegaer+erhe ++kW++r+++aGFkp+pls+ +++++k+ll+ + ++ y++ e++++l+lgW++rpL++ MA_10426489g0020 568 RESKERINVEQHCLARDIVNIIACEGAERVERHELMGKWKSRFTMAGFKPYPLSSIVNSTIKSLLEGYCQK-YSLLERDDTLYLGWSNRPLIA 659 *****************************************************************66.***************** PP GRAS 370 vSaWr 374 ++aW+ MA_10426489g0020 660 ACAWQ 664 **6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.634	266	645	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.9E-130	293	664	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0005737	Cellular Component	cytoplasm
GO:0004871	Molecular Function	signal transducer activity

Sequence ? help Back to Top
Protein Sequence Length: 664 aa Download sequence Send to blast
MNVQFKTELV ATSQNSQYVL DHPHKAFGTC LPDAGPSVAS NISVEQASGS HEWIHGTPKT 60 SYQNFPCSPQ EVISYGLGHS TRTHECYRND KYRMSDGSVE SSPLQDNDSL QSQRSTHEAP 120 PYSTGHSFYS SPSVQSCSSS GSPASPHVSQ NYPSGLHYFH SPQEPYGPAG SGHSGIEQEE 180 DLKYMLQELE TALLVSESDD PDNFGSMYEE QRFPEYSEWN VETMHDTTNN YCQSSSSVYP 240 KPEQVEVSSM TLNHVKVEIV NEVDLGTFCS STLNASEEQK QELEFDIPYG DVKELLIACA 300 KVVADSDNDS FKIDKLIAEI RQVVSISGDP MQRLGAYMVE GLVARLASSG GIIYKALRCK 360 EPTSPELLSY MQVLYEVCPY FKFGYMAANG AIAEAFKDED RVHIIDFQIG LGSQWVTLIQ 420 ALAARPRGPP RVCITGIDDP LSNYARGGGL ELVGKRLSKL AETCNVPFEF HPVPVMGADV 480 QVNMLKCQAG HALAVNFSFQ LHHMPDESVN TSNHRDRIIR IAKGLAPKVL TLVEQESNTN 540 TAPFFPRFME TLSYYTAVFE SLDVTLPRES KERINVEQHC LARDIVNIIA CEGAERVERH 600 ELMGKWKSRF TMAGFKPYPL SSIVNSTIKS LLEGYCQKYS LLERDDTLYL GWSNRPLIAA 660 CAWQ

Sequence ? help Back to Top

Protein Sequence Length: 664 aa Download sequence Send to blast

MNVQFKTELV ATSQNSQYVL DHPHKAFGTC LPDAGPSVAS NISVEQASGS HEWIHGTPKT  60
SYQNFPCSPQ EVISYGLGHS TRTHECYRND KYRMSDGSVE SSPLQDNDSL QSQRSTHEAP  120
PYSTGHSFYS SPSVQSCSSS GSPASPHVSQ NYPSGLHYFH SPQEPYGPAG SGHSGIEQEE  180
DLKYMLQELE TALLVSESDD PDNFGSMYEE QRFPEYSEWN VETMHDTTNN YCQSSSSVYP  240
KPEQVEVSSM TLNHVKVEIV NEVDLGTFCS STLNASEEQK QELEFDIPYG DVKELLIACA  300
KVVADSDNDS FKIDKLIAEI RQVVSISGDP MQRLGAYMVE GLVARLASSG GIIYKALRCK  360
EPTSPELLSY MQVLYEVCPY FKFGYMAANG AIAEAFKDED RVHIIDFQIG LGSQWVTLIQ  420
ALAARPRGPP RVCITGIDDP LSNYARGGGL ELVGKRLSKL AETCNVPFEF HPVPVMGADV  480
QVNMLKCQAG HALAVNFSFQ LHHMPDESVN TSNHRDRIIR IAKGLAPKVL TLVEQESNTN  540
TAPFFPRFME TLSYYTAVFE SLDVTLPRES KERINVEQHC LARDIVNIIA CEGAERVERH  600
ELMGKWKSRF TMAGFKPYPL SSIVNSTIKS LLEGYCQKYS LLERDDTLYL GWSNRPLIAA  660
CAWQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-62	296	664	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT115341	0.0	BT115341.1 Picea glauca clone GQ03614_J13 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014504989.1	0.0	scarecrow-like transcription factor PAT1
Refseq	XP_014504990.1	0.0	scarecrow-like transcription factor PAT1
Refseq	XP_014504991.1	0.0	scarecrow-like transcription factor PAT1
Swissprot	Q8GVE1	0.0	CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBL	A0A0D6QZI2	0.0	A0A0D6QZI2_ARACU; Uncharacterized protein
STRING	XP_007142502.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1409	14	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	0.0	GRAS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627] Tanabe S, et al. The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23. Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51 [PMID:26287768]