PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10426489g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 433aa    MW: 47875.1 Da    PI: 4.5142
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10426489g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS159.82.3e-492904332146
              GRAS   2 velLlecAeavssgdle..laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                       +elL++cA++v+++d+   ++++l+a++++ +s +gdpmqRl ay++e+L arla+s+  +ykal+++e +   s e l+++++++ev+P++k
  MA_10426489g0010 290 KELLIACAKVVADSDNDsfKIDKLIAEIRQVVSISGDPMQRLGAYMVEGLVARLASSGGIIYKALRCKEPT---SPELLSYMQVLYEVCPYFK 379
                       689********997766569**************************************************9...9****************** PP

              GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTg 146
                       f++++aN aI ea++ e+rvHiiDf+i+ G QW++L+qaLa+Rp+gpp++ iTg
  MA_10426489g0010 380 FGYMAANGAIAEAFKDEDRVHIIDFQIGLGSQWVTLIQALAARPRGPPRVCITG 433
                       *****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.222263433IPR005202Transcription factor GRAS
PfamPF035147.9E-47290433IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MNVQFKTELV ATSQNSQYVL DHPHKAFGTC LPDAGPSVAS NISVEQASGS HEWIHGTPKT  60
SYQNFPCSPQ EVISYGLGHS TRTHECYRND KYRMSDGSVE SSPLQDNDSL QSQRSTHEAP  120
PYSTFYSSPS VQSCSSSGSP ASPHVSQNYP SGLHYFHSPQ EPYGPAGSGH SGIEQEEDLK  180
YMLQELETAL LVSESDDPDN FGSMYEEQRF PEYSEWNVET MHDTTNNYCQ SSSSVYPKPE  240
QVEVSSMTLN HVKVEIVNEV DLGTFCSSTL NASEEQKQEL EFDIPYGDVK ELLIACAKVV  300
ADSDNDSFKI DKLIAEIRQV VSISGDPMQR LGAYMVEGLV ARLASSGGII YKALRCKEPT  360
SPELLSYMQV LYEVCPYFKF GYMAANGAIA EAFKDEDRVH IIDFQIGLGS QWVTLIQALA  420
ARPRGPPRVC ITG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-2129643326164Protein SCARECROW
5b3h_A5e-2129643325163Protein SCARECROW
5b3h_D5e-2129643325163Protein SCARECROW
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1153410.0BT115341.1 Picea glauca clone GQ03614_J13 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP14091447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.23e-65GRAS family protein