PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10426405g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 316aa    MW: 34898.8 Da    PI: 6.288
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10426405g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-051331321
                      ETTTTEEESSHHHHHHHHH CS
           zf-C2H2  3 CpdCgksFsrksnLkrHir 21
                      C++Cg+ F ++ +L rH+r
  MA_10426405g0010 13 CEYCGEEFFSWKTLIRHMR 31
                      ******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.6811138IPR007087Zinc finger, C2H2
SMARTSM003550.0191133IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.36E-71233No hitNo description
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
PfamPF139120.0571334IPR007087Zinc finger, C2H2
SuperFamilySSF576674.36E-7168195No hitNo description
PfamPF139121.2E-5172197IPR007087Zinc finger, C2H2
SMARTSM003553.7173195IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369173200IPR007087Zinc finger, C2H2
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MLPSTSLKNL QLCEYCGEEF FSWKTLIRHM RCHYNNPTKG EQHGVSEDKE DVSNSESDSD  60
SNPQWNKTKG KRSKRPRRPN SEEAAAAAAP ATTAASENEE VEYMANCLVM LATAGEPWES  120
KNRQFYQQCA TSGSVDVKTP IVLKTHKRKA PSGKPQSQLQ PVKLTSKKMG STFQCRSCKK  180
IFDSFHALGG HRASHNKIKG CFAREEAESL EGEEIITTDE DLSKDMHKTP PSKDQLTDSC  240
SNGIEEVHGG LKPFESGQAL SGHMGIISSE TTSDISSTKQ QQHPPWLDLN LPAPLDDDAN  300
DEFPLPATNS LLGNIY
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP2521820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.11e-10C2H2-like zinc finger protein