PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10426405g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C2H2 | ||||||||
Protein Properties | Length: 316aa MW: 34898.8 Da PI: 6.288 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.4 | 2.6e-05 | 13 | 31 | 3 | 21 |
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C++Cg+ F ++ +L rH+r MA_10426405g0010 13 CEYCGEEFFSWKTLIRHMR 31 ******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.681 | 11 | 38 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.019 | 11 | 33 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.36E-7 | 12 | 33 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 13 | 33 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.057 | 13 | 34 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.36E-7 | 168 | 195 | No hit | No description |
Pfam | PF13912 | 1.2E-5 | 172 | 197 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.7 | 173 | 195 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.369 | 173 | 200 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 175 | 195 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MLPSTSLKNL QLCEYCGEEF FSWKTLIRHM RCHYNNPTKG EQHGVSEDKE DVSNSESDSD 60 SNPQWNKTKG KRSKRPRRPN SEEAAAAAAP ATTAASENEE VEYMANCLVM LATAGEPWES 120 KNRQFYQQCA TSGSVDVKTP IVLKTHKRKA PSGKPQSQLQ PVKLTSKKMG STFQCRSCKK 180 IFDSFHALGG HRASHNKIKG CFAREEAESL EGEEIITTDE DLSKDMHKTP PSKDQLTDSC 240 SNGIEEVHGG LKPFESGQAL SGHMGIISSE TTSDISSTKQ QQHPPWLDLN LPAPLDDDAN 300 DEFPLPATNS LLGNIY |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2521 | 8 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 1e-10 | C2H2-like zinc finger protein |