PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_10426365g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||
Protein Properties | Length: 710aa MW: 79312.9 Da PI: 4.6155 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.8 | 5e-54 | 13 | 140 | 2 | 129 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 ppGfrF+P+dee+v +yLk+kv+g+k+e+ +vi+evd+yk+ePwdLp k + +++ ewyfF++rd+ky++g+r+nrat++gyWkatgkd++v MA_10426365g0010 13 PPGFRFRPSDEEIVGYYLKNKVQGNKFEF-DVIREVDLYKCEPWDLPeKsFLPSRDLEWYFFCPRDRKYPNGSRSNRATEAGYWKATGKDRKV 104 9**************************99.9***************95334455777************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 s +++++g+kktLvf+kgrap+ge+tdW+mheyrle MA_10426365g0010 105 SS-RSNKIGTKKTLVFHKGRAPHGERTDWLMHEYRLE 140 *9.9999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.15E-62 | 3 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.802 | 12 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-28 | 13 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 710 aa Download sequence Send to blast |
MASSVQAAAV NFPPGFRFRP SDEEIVGYYL KNKVQGNKFE FDVIREVDLY KCEPWDLPEK 60 SFLPSRDLEW YFFCPRDRKY PNGSRSNRAT EAGYWKATGK DRKVSSRSNK IGTKKTLVFH 120 KGRAPHGERT DWLMHEYRLE GTQCKGGANL QDLYVLSRVF RKAKQGLNDQ EPTQEVGLPM 180 LNNTLSPTDV SDGDIEDQSE DRCSQGKQEE DAPASSSVRS ETSEILDNKA EDNNCIDGPM 240 ETLQDISNPT CNLVSIHETS FNKNDESQRG SQKLQQPSSF CLPWEEEDFQ QIPENAYLSN 300 NDYLPGNQIN SSGMESIPFN GSFPVAQDFD EDNLDLSYLL ENFENCPELD EFLPPVEEEN 360 NDEVEIQIRS RPQLWLQQPL PSQGSAPRRL RLQIYKTEAS ANGRKQHLLT LNDQSASYDC 420 NSDDSEVITQ LEDSLQASYP SQISCCGVED DADSDIFHGS VESSERVANG HDFNLAPTQL 480 LIPSFFPIGE ASEKSDMSVN VKESGDKSVL IERSESAMSS ACSQSSSSEV QTETTVSHTT 540 SSQETDMVSV KSSALGMESP TVLASKKVLI SEVASSFGSR QLGAVSSNHN AVSESHMSYK 600 GRVKFTGFNV ILSCLKRRGK SREKYVTSDW VEESRNVTEN FPDLCSKDSW KGFSNLKKAL 660 GIFIQPYQLQ SKISKGANCI SLICLLSTVF LVLCIWNTCH FARSSSSIIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-53 | 8 | 139 | 11 | 140 | Stress-induced transcription factor NAC1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 614 | 620 | LKRRGKS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT110204 | 0.0 | BT110204.1 Picea glauca clone GQ03218_B05 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 5e-76 | NAC domain containing protein 57 |