PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10426320g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 501aa    MW: 55847.4 Da    PI: 10.2862
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10426320g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.6e-09134179454
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        h + ErrRR++++++fe Lr+l P  +      + +Ka+iL  + eY+ sL
  MA_10426320g0010 134 HHIISERRRREKLKEKFEALRSLFPRiS------RKDKASILAYTREYLTSL 179
                       58999*********************66......899***********9998 PP
2HLH19.61.7e-06473497428
                       HHHHHHHHHHHHHHHHHHHHHCTSC CS
               HLH   4 ahnerErrRRdriNsafeeLrellP 28 
                        h + ErrRR++++++fe Lr+l P
  MA_10426320g0010 473 HHIISERRRREKLKEKFEALRSLFP 497
                       7999******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.32E-9129180No hitNo description
PROSITE profilePS5088814.284130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-15132205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-11133177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-6135179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-8136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1707.1E-4178202No hitNo description
CDDcd000837.47E-5468497No hitNo description
PROSITE profilePS5088810.398469501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-6469500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-6473499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MSASEAASGF YPYQQTLQLP SSLGLLISRH DHETALDYPG SSSQISVPDL LLFQKMSQAS  60
GFPFPSSANN MILSAFGMWR PPSKVPTAPV VEGQYRLKRC LAILRNIHAE RLRQISISGN  120
HRAPGGTVSS SQLHHIISER RRREKLKEKF EALRSLFPRI SRKDKASILA YTREYLTSLK  180
SRGEELEKRN KQLESELKKL PQAQSQGGAG TSTALQQQGS TGTEGGDSVV TVEVSKIGGS  240
TNATTCDEMG IVVVVDRPRN TIDLMTALLK RLREMGVALI STTISTVHHE HDQSRLQLRM  300
TATIKMQDHE VDRVKEWLLS AVERDXDQIN IPSDMHQYSM SASEAASGFY PYQQTLQLPS  360
SSGLLISRHD HETALDYPGS SSQISVPDLL LFQQMSQVSG FPFPSSANNM MLSAFGMWRP  420
PSKVPTPPVV EGQYRLKRCI AILRTIHAER LRQISMSGSH RATGGTVSSS QVHHIISERR  480
RREKLKEKFE ALRSLFPRIS R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1477482ERRRRE
2478483RRRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.17e-09bHLH family protein